Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00843 ATGTGTAATAAAGGGTTTCAATGCTTGAGCGAGTCTGAGAGTGTAATTGATCATCGACAACACTACTTAATGGATAGTCCTACAGCGGTTCGATCGCCGGCTACCGGTTCAGGTTCAGGTTCAGGTTCAGGTTCGGGTTCAGCACCAAGCTCAAATGATGATAGCCGGCGTGTTAAATTCTTATGTAGCTTTCTAGGGAGCATAATGCCCCGTCCCCAAGATGGGAAGCTACGTTATGTTGGTGGAGAGACACGTATTGTGAGTGTTCCAAGAGATATTAGCTTTGAGGAGTTAATGGGGAAGATGAGAGAGTTGTATGAAGGGGTTGCTGTGTTGAAGTACCAGCAGCCTGATGAGGATCTTGATGCCCTTGTCTCTGTTGTTAATGATGATGATGTGATTAACATGATGGAAGAGTATGACAAATTGGGTTCTGGGGATGGATTCACTAGGCTCAGGATTTTCTTGTTTTCACAATCTGAGCAGGATGGTTCCACACACTTCATTGATGGGGATGACTCTGAGAGGAGGTATGTTGATGCATTAAATAGTTTAAATGATGCATCAGACTTTAGGAGGTTGCAACAAATGGAGTTTCCTATGATTGGCACTGTTGAGGATATTCATGTGGCTGATCAGTTCTTTAATCCAATCAGTGTGGAAAGTGGGATTCATAGCCAGAGAAGTGGGGAACTATCTATGTCACAGTACAATATGCATCATCTCTCCATCCCGCACCAGCAACCTATAGGCCAGAGGTATAATGAAATGGATTCTCCGTGGAATCCTGCCTATTACTCCCCTAGACATCATGGTCATCATGAATTTCCATCGTCTCCTTCTAGTACAAGATACCGTGTGCCATTTCCTCCTGAATTGCCAGATAAGTGCATTGATAGAGTGCCCGAAGAGTATGCTCGACATCATGTAAATCACCACCTTGTGTATGACAACCAACCACAGTATTCTGAAAATGTTGTGTGGGTGCCACATGGTGAGAAGTCAGGTTTTTCTGGCAGTGTCATCAATGGCCCCCATGTTCTTGATGGGAACAGTATATGTGAGCATTGTCGCATGGGTTTTCAGAGAGGTCAACCACATGTGGAGCATCCTAATATTAGTAATGGACTTCCACCGGTTGCTAATACATGTGTAGAATGCCCCGCAAATAGGGATACTTTCACCGTGAATGCTGATGCAAAGTTACATCCTGTAATTTATCCCAATGAGCCTAATAGTGATCATAGGTCTGTTTATAGTGATACTCAGAATCATGAGAGAGGATGGGGTTTGCAGCATCAGACAACTGCTCGGGTCGAGGAATCAAGAGGGCATGTCTCTGGAACTGGAAGAGTGAATGATCAATATGTTGGTGATGTTCCTGGTATAAATTTCTCTCTTGGGAATGGCAGTGTGACTGATGGACATACTTTGCCTTCCAATTATGTTCAACAACGGATTGGACCTGAATTGGGGGCTGAACCTTTACCTGACCAAACTGTGGCTGCTATACCACATCTACAAATTCCTCCTGTTGAAGAATGCAGTGTGCGGTATGGAAATACACCTTCTCCTTATGGAGTAGATAGTAATTACGCTGTGCCTCATGGGCATGCACCTGGTTATGCTTTCTGGAGAAACCCTCCAACTCCAGTTCATATTGGACCATCTTATGAGGCAACTATTCCACCTCAGCAGGTGGATGGTGTGATTAATGCTGGATTAATCCGGGGAGAGGGCAGTCCAGGATTTTTCATTGGACCAGATAGTCAAAGTCCTTGGGTTGATTCCTCACAGAAATTGTCAGGACATGATGTGTCAGCCATCCCAGAATATCCTTATGCAAATGCTCTGAATTTTAATCCAAAAGCCCCTGGTCAGGAAAATCAACATCCAATTACTTTAGATGCCATTCATCCCCCACAGGAGATAAATGCTGGTATCTGCTTGGAACCTGTGCAGCTACCAAAATCGTCTTTTAATATGGTTCACAATAATGAGGTTTTAAGAAATGATACTCATTTGACTGAGGCAATGAGTTTGCAATCTAAAAGTTTGCTTGAAGAAGGAAAAGAGGCAACAAACGAGGACAAGGTTGAAAACAATAAAGTGCCGAGTATATCTTTTTCAGAGCAAAATAAAATTGCTGAGAATGCATGTGAAGTTTCCGCTTCTGTTGAGCCTAATAATTCAAATTCAAAACCGGCAGTAGAGTGTGGACATGTTGAGAAAGTGGCTGATAAGGACCACTCTGATCCAGAAGATTCTAAGCATTTAGTTGATCAATTCAACTTCTTGCCAGAGTTGATTGCTTCTGTAAAAAAGGCTGCATTAGAAGATAATAAGGAGGTGAAAGCTACAGATGATGAACATAAGCATGCCAATTCTCAGATGCATGATTCAAATACCAAGGAAGAAACAGCGGATGAAGTAGAACCAGTGAATGCTCATGGTGATTTAGAATTGGACCCTGAAAATGACAATGTAGATACTTCTAAAATTGAGCCTACAAAGGCTGAGGCAGAAGCTATTGCTAGGGGATTGCAGACTATTAAAAATGATGATTTGGAGGAGATCCGCGAGCTAGGTTCTGGAACATATGGGGCTGTTTATCACGGGAAATGGAAAGGTTCTGATGTTGCCATTAAGAGGATAAAAGCCAGTTGTTTTGCTGGAAGACCTTCTGAAAGAGCAAGATTGATTGCAGATTTCTGGAAGGAGGCATTGATGCTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTCTATGGCATTGTTCGTGATGGGCCTGATGGTTCTTTAGCAACAGTGACAGAATTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGAACAATAGATCGTCGTAAAAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATCTGCATGGAAAGAACATTGTGCATTTTGATTTGAAATGTGAGAATCTATTGGTCAATATGAGAGATCCACAACGGCCTGTTTGCAAGATCGGTGATTTGGGTTTATCAAAGGTTAAACAACACACTTTAGTGTCTGGAGGGGTACGGGGAACTTTGCCATGGATGGCCCCTGAACTTCTTAGCGGGAAAAGCAATATGGTGTCAGAGAAGATTGATGTTTACTCATTCGGGATAGTGATGTGGGAATTACTCACAGGGGATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGGAGGAATTGTGAACAACACTTTGCGTCCTCAAATCCCATCGTGGTGTGATCCTGAATGGAAGTCCCTGATGGAGAGTTGTTGGGCTTCTGACCCTGTAGAAAGGCCATCATTTTCAGAAATTTCCAAGAAGCTGAGGAGTATGGCTGCTGCAATGAATATGAAATAG 3390 0.4265 MCNKGFQCLSESESVIDHRQHYLMDSPTAVRSPATGSGSGSGSGSGSAPSSNDDSRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVPRDISFEELMGKMRELYEGVAVLKYQQPDEDLDALVSVVNDDDVINMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSTHFIDGDDSERRYVDALNSLNDASDFRRLQQMEFPMIGTVEDIHVADQFFNPISVESGIHSQRSGELSMSQYNMHHLSIPHQQPIGQRYNEMDSPWNPAYYSPRHHGHHEFPSSPSSTRYRVPFPPELPDKCIDRVPEEYARHHVNHHLVYDNQPQYSENVVWVPHGEKSGFSGSVINGPHVLDGNSICEHCRMGFQRGQPHVEHPNISNGLPPVANTCVECPANRDTFTVNADAKLHPVIYPNEPNSDHRSVYSDTQNHERGWGLQHQTTARVEESRGHVSGTGRVNDQYVGDVPGINFSLGNGSVTDGHTLPSNYVQQRIGPELGAEPLPDQTVAAIPHLQIPPVEECSVRYGNTPSPYGVDSNYAVPHGHAPGYAFWRNPPTPVHIGPSYEATIPPQQVDGVINAGLIRGEGSPGFFIGPDSQSPWVDSSQKLSGHDVSAIPEYPYANALNFNPKAPGQENQHPITLDAIHPPQEINAGICLEPVQLPKSSFNMVHNNEVLRNDTHLTEAMSLQSKSLLEEGKEATNEDKVENNKVPSISFSEQNKIAENACEVSASVEPNNSNSKPAVECGHVEKVADKDHSDPEDSKHLVDQFNFLPELIASVKKAALEDNKEVKATDDEHKHANSQMHDSNTKEETADEVEPVNAHGDLELDPENDNVDTSKIEPTKAEAEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMINGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNTLRPQIPSWCDPEWKSLMESCWASDPVERPSFSEISKKLRSMAAAMNMK. 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00843 1129 MobiDBLite consensus disorder prediction 30 54 - -
Seca11g00843 1129 MobiDBLite consensus disorder prediction 28 54 - -
Seca11g00843 1129 ProSitePatterns Serine/Threonine protein kinases active-site signature. 981 993 IPR008271 GO:0004672|GO:0006468
Seca11g00843 1129 Gene3D Transferase(Phosphotransferase) domain 1 942 1129 - -
Seca11g00843 1129 ProSitePatterns Protein kinases ATP-binding region signature. 862 883 IPR017441 GO:0005524
Seca11g00843 1129 Gene3D - 76 160 - -
Seca11g00843 1129 SUPERFAMILY CAD & PB1 domains 74 163 - -
Seca11g00843 1129 Pfam Protein tyrosine and serine/threonine kinase 857 1119 IPR001245 GO:0004672|GO:0006468
Seca11g00843 1129 CDD PB1_UP2 61 157 - -
Seca11g00843 1129 Pfam PB1 domain 73 158 IPR000270 GO:0005515
Seca11g00843 1129 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 944 1129 - -
Seca11g00843 1129 Gene3D Phosphorylase Kinase; domain 1 841 941 - -
Seca11g00843 1129 PRINTS Tyrosine kinase catalytic domain signature 1090 1112 IPR001245 GO:0004672|GO:0006468
Seca11g00843 1129 PRINTS Tyrosine kinase catalytic domain signature 975 993 IPR001245 GO:0004672|GO:0006468
Seca11g00843 1129 PRINTS Tyrosine kinase catalytic domain signature 938 951 IPR001245 GO:0004672|GO:0006468
Seca11g00843 1129 PRINTS Tyrosine kinase catalytic domain signature 1046 1068 IPR001245 GO:0004672|GO:0006468
Seca11g00843 1129 MobiDBLite consensus disorder prediction 783 831 - -
Seca11g00843 1129 SMART PB1_new 72 157 IPR000270 GO:0005515
Seca11g00843 1129 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 849 943 - -
Seca11g00843 1129 ProSiteProfiles Protein kinase domain profile. 856 1123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00843 1129 PANTHER SERINE-THREONINE PROTEIN KINASE 116 1121 - -
Seca11g00843 1129 SMART serkin_6 856 1123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00843 1129 CDD STKc_MAP3K-like 862 1119 - -
Seca11g00843 1129 SUPERFAMILY Protein kinase-like (PK-like) 848 1117 IPR011009 -
Seca11g00843 1129 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 77 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00843 Seca-Chr11 8588687 8594397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00843 52 1129 MAP Kinase Kinase Kinase AT5G57610 54.334 0.0 1068
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Seca11g00843 PK_Tyr_Ser-Thr 2.1e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00843 - - gmx:100779077 1842.78