Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00830 ATGAATTTCCATCCTAATACTTCTCTTCATCACCTAACCCAACCAGATGAGAATCATCTCAATCTAGATCTTCTCCTTGAGCCTTCTTCTTCTTCATCATCTTCACCTATTAGTCCCATAGAGCCTCGAGTATTCTCATGCAACTATTGTCAGAGAAAGTTTTACAGCTCTCAAGCACTTGGGGGACACCAAAATGCTCATAAGCTTGAAAGGACACTGGCTAAGAAGAGCAGGGAGCTGAGTTCTGCCATGCAGTCTTATGGAGGAGCAGAGCATAACAGATCAAACTTCAGTGCTTCACACCATCTTGGGGTCCTTCAGGATAACCAAGGACAAGGTGTGAGTGTGAGGCTTGGTGGAAGAAGAGACTTTAGTACTTATGGTTCTTCCAAGGAAGGTGTAGTTGGTCCTTCTTGGTCCTCCAGGGGTTATGCTTCTGAACATGTTCAAGAGGATATTAGCCAACTTGACTTGTCATTAAGGCTTTGA 489 0.4397 MNFHPNTSLHHLTQPDENHLNLDLLLEPSSSSSSSPISPIEPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSAMQSYGGAEHNRSNFSASHHLGVLQDNQGQGVSVRLGGRRDFSTYGSSKEGVVGPSWSSRGYASEHVQEDISQLDLSLRL. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00830 162 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Seca11g00830 162 FunFam Zinc finger protein 2 25 92 - -
Seca11g00830 162 SUPERFAMILY beta-beta-alpha zinc fingers 42 72 IPR036236 -
Seca11g00830 162 Coils Coil 66 86 - -
Seca11g00830 162 Gene3D Classic Zinc Finger 29 102 - -
Seca11g00830 162 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 99 IPR044246 GO:0009788
Seca11g00830 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00830 Seca-Chr11 8472359 8472847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00830 1 162 C2H2 Transcription Factor Family AT5G57520 47.159 4.64e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g00830 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00830 - - vra:106768043 189.889