Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00829 ATGTCACCCTCTCCACCACAAGAATTCATCTTCCGCTCCAAACTCCCCGACATTCCCATCCCCACTCACCTTCCATTACACTCTTACTGTTTCCAAAACCTCTCCAACTTTCAACACCGTCCATGCCTCATCGACGGCGATACCGGCGAGACCCTCACCTACGCCGACGTCCACCTCACCTCCCGAAAAGTCGCCGCCGGCCTCCACTCCATCGGCATCCGTAAAGGTGACGTCATCATGCTCGTCCTCCGCAACTGTTCCCAATTCGCCCTCGCCTTCCTCGGAGCATCCTTCGCCGGCGCCGCCATCACCACCGCAAATCCGTTCTACACGGCGGCAGAGCTCGCCAAGCAAGCAACAGCAACCAAGACCAAACTCATCATAACACAGGCAGCGTTCGTAGAGAAAATCAAGGATTTCTCGGGAAACACTGATATCAAAGTGATATGCATTGATCCTTCAGAAAACAAGGACGTTCTGCATTTCTCTGTTTTAACAAACGCTGACGAAAACGAAGCGCCTGTTGTGGAAATCAGTCCAGACGACGTCGTTGCGCTTCCGTTTTCTTCCGGCACGTCAGGGCTTCCTAAAGGTGTGATGTTAACGCACAGAAACTTGGTGACGACGATTGCGCAGTTAGTTGACGGCGAAAATCCGCACCAGTATACTCACTCAGAGGATGTGCTTCTGTGTGTGCTTCCTATGTTTCATATCTATGCGCTTAACTCCATTTTGCTGTGTGGGATTCGTGCTGGTGCGGCAGTGTTGACTGTGCAGAAGTTTGAGATTACGACGCTGTTGGAGCTGATTCAGAAATACAAGGTGACGGTTGCGTCGGTTGTGCCACCTATCGTTTTGGCGTTGGTTAAGAGCGGGGAATCTCATCGATACGACTTGTCGTCTATTCGGGTGATGATAACTGGTGCCGCACCTATGGGAATGGAACTGGAAGAAGCTGTGAAAGCAAGGCTACCAAAAGCCATACTTGGACAGGGATACGGGATGACAGAGGCAGGGCCATTGGCCATTAGCTTGGCATTTGCGAAGGAGCCATTCAAGACAAAAGCAGGTGCTTGCGGGACAGTCGTCAGAAACGCTGAGATGAAAATCGTGGACACGGAGACAGGTGCTTCCCTTCCAAGAAACAAAGCGGGTGAAATTTGCATTAGAGGCACAAAGAATATGAAAGGATATTTAAATGACCCAGAGGCCACAGAAAGAACTATAGACAAAGAAGGATGGTTACATACAGGTGATATTGGTGTCATCGACGATGATGATGAACTCTTCATTGTTGATCGATTAAAAGAGCTTATCAAATACAAAGGATTCCAAGTAGCTCCAGCTGAGCTCGAAGCGATGTTGATTGCCCACCCAAACATCTCTGATGCTGCCGTTGTACCCTTGAAAGATGAAGCTGCCGGAGAAGTCCCAGTTGCATTTGTCGTGAGATCAAATGGTTCTAAGATCACCGAGGATGAAATCAAGCAATACATTTCACAACAGGTGGTATTTTACAAGAGAATCAACAGAGTTTTCTTCACGGACACTATTCCTAAAGCAGCCTCAGGCAAAATTCTACGAAAGGAATTAACTGCAAGGCTTAACCAAGGTTTGGTGGCCACTTAG 1629 0.4868 MSPSPPQEFIFRSKLPDIPIPTHLPLHSYCFQNLSNFQHRPCLIDGDTGETLTYADVHLTSRKVAAGLHSIGIRKGDVIMLVLRNCSQFALAFLGASFAGAAITTANPFYTAAELAKQATATKTKLIITQAAFVEKIKDFSGNTDIKVICIDPSENKDVLHFSVLTNADENEAPVVEISPDDVVALPFSSGTSGLPKGVMLTHRNLVTTIAQLVDGENPHQYTHSEDVLLCVLPMFHIYALNSILLCGIRAGAAVLTVQKFEITTLLELIQKYKVTVASVVPPIVLALVKSGESHRYDLSSIRVMITGAAPMGMELEEAVKARLPKAILGQGYGMTEAGPLAISLAFAKEPFKTKAGACGTVVRNAEMKIVDTETGASLPRNKAGEICIRGTKNMKGYLNDPEATERTIDKEGWLHTGDIGVIDDDDELFIVDRLKELIKYKGFQVAPAELEAMLIAHPNISDAAVVPLKDEAAGEVPVAFVVRSNGSKITEDEIKQYISQQVVFYKRINRVFFTDTIPKAASGKILRKELTARLNQGLVAT. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00829 542 Gene3D - 436 540 IPR045851 -
Seca11g00829 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 12 436 - -
Seca11g00829 542 FunFam 4-coumarate--CoA ligase 2 437 538 - -
Seca11g00829 542 CDD 4CL 20 531 - -
Seca11g00829 542 Pfam AMP-binding enzyme 34 441 IPR000873 -
Seca11g00829 542 SUPERFAMILY Acetyl-CoA synthetase-like 14 537 - -
Seca11g00829 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 532 - -
Seca11g00829 542 Gene3D - 5 435 IPR042099 -
Seca11g00829 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Seca11g00829 542 Pfam AMP-binding enzyme C-terminal domain 450 525 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00829 Seca-Chr11 8452823 8459966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00829 8 503 Monolignol Biosynthesis Gene Families AT1G51680 66.468 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00829 K01904 - gmx:548034 892.108