Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00821 ATGGGAACTGATGAGGAGTGCTCCATTGTTCTCGAGTTATCTGAAAATGATCCTTTCTTTGATAAAAAGAAGAAATTATTACAAAGTAAGGGGTTTAGTCCCAAGGAACAGATATGTCTCACGAGCTCCTCAGAACCTGGTTGGATGAATGCTAGTGCAAAGATGTTACTCCAGATTGCACGAATCATACAGTTAAATGAGCTGGAACTTTATTTTGCTGAAGACGATGCATGCACATCAGTGGAGTTTTACAGTGCCAGGAATGAGCTGGAGGCTCTCAATTTAATTGTCCTGCTCATTGACACGTCACTTTCTAGTTGCACACATCTCCATACAAATATCCTGCAAGGGTATCGACAAACAATTCTTGATTTCATTTCTGATTTTGGGGACAAAAATAGCATGAAGGGAGTAGTTGAAAAGAACCACAGCTGTGACAAAGAAGAATGCCTGATAGAGTGGGGTGAAAGCAATGGTGTAAAGACCCAGTTAAAGATAGCTTATGTTGAAGGAGCAGGTCGGGGTGCGATAGCAAGGAGAGATCTAAAAGTTGGAGACATTGCTTTAGAAATTCCTGTGTCGGTTATCATTTCTGAGGAGGTCATGCATGAAACTGAAATGTATCGTGTCTTAAAAGAGGTTGATGGCATATCATCTGAGACAATATTACTATTATGGAGCATGAAAGAGAAGTATAACTGTGATTCAAAATTCAAAGTTTACTTTGACACACTTCCTGAAAAATTTAATACAGGATTGAGTTTTGGTATTGATGCAATTACAATGCTAGATGGAACCTTGCTGTTTGAAGAGATAATGCAAGCAAGACAGCACCTGCATGCTCAATATGATGAGTTGTTTCCGGCTTTGTGCAATGATTTTCCTGATATATTTCCACGAGAGCTGTACACGTGGGAGAAATTTTTATGGGCTTGTGAACTTTGGTACTCCAATAGCATGACGATAATGTATTCTGATGGAAAGCTGAGAACATGCTTGATTCCTATTGCTGGCTTCCTTAATCATTCATTGTGCCCACATGTTATGCACTATGGAAAAGTAGATCCTTCAACAAATTCATTGAAATTTCGTCTGTCAAGACCATGCAGATCTGGAGAAGAATGCTGCTTAAGCTATGGGAACTACTCCAGCTCTCATCTAATTACCTTTTATGGTTTCTTACCTGAAGGAGACAACCCGTATGATGTCATTCCGTTAGACATTGATGGTTATGATGTTGATTCTATTGAGGATAAACCCGTGTCCAACTGGACGACTCACATGGTGCGTGGTACTTGGCTCTCCAACAATCACAGCACATTCTATTATGGCTTACCCGCTCCATTATTAGAGCATCTTCGGAGATCTCGAAGTCCCATGCTGCGAACTAAGACTTTCGTACTGTTCTTTTTCCTTCCAATCTTAATTTATCTTTAA 1437 0.3987 MGTDEECSIVLELSENDPFFDKKKKLLQSKGFSPKEQICLTSSSEPGWMNASAKMLLQIARIIQLNELELYFAEDDACTSVEFYSARNELEALNLIVLLIDTSLSSCTHLHTNILQGYRQTILDFISDFGDKNSMKGVVEKNHSCDKEECLIEWGESNGVKTQLKIAYVEGAGRGAIARRDLKVGDIALEIPVSVIISEEVMHETEMYRVLKEVDGISSETILLLWSMKEKYNCDSKFKVYFDTLPEKFNTGLSFGIDAITMLDGTLLFEEIMQARQHLHAQYDELFPALCNDFPDIFPRELYTWEKFLWACELWYSNSMTIMYSDGKLRTCLIPIAGFLNHSLCPHVMHYGKVDPSTNSLKFRLSRPCRSGEECCLSYGNYSSSHLITFYGFLPEGDNPYDVIPLDIDGYDVDSIEDKPVSNWTTHMVRGTWLSNNHSTFYYGLPAPLLEHLRRSRSPMLRTKTFVLFFFLPILIYL. 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00821 478 Pfam SET domain 173 380 IPR001214 GO:0005515
Seca11g00821 478 Pfam Rubisco LSMT substrate-binding 15 106 IPR015353 -
Seca11g00821 478 Gene3D - 3 111 IPR036464 -
Seca11g00821 478 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 146 453 - -
Seca11g00821 478 FunFam Transcription factor, E2F and DP-related 146 394 - -
Seca11g00821 478 CDD SET_LSMT 164 394 - -
Seca11g00821 478 Gene3D set domain protein methyltransferase, domain 1 145 394 - -
Seca11g00821 478 ProSiteProfiles SET domain profile. 162 380 IPR001214 GO:0005515
Seca11g00821 478 FunFam SET domain-containing protein 4 142 - -
Seca11g00821 478 SUPERFAMILY SET domain 148 401 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00821 Seca-Chr11 8309979 8318414 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca11g00821 SET 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00821 K19199 - gmx:100778605 847.425