Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00804 ATGGACTCATCTTCCTCTTCACCGCACTCTCTCGCTTTCTCTCTTTCCAATCACTTTCCTAACCCTTCCCCTTCTCCCCTCTCCCTTTTACACTCCTTCACCTATCCTTCCTCCACACCCACCCACACAGAAGAACACACTACTTCAGGAAGCAACGCCACACCGGAGGCCACGAACAGCACCGTGGGAGGAGCAGCCAATCTCTCCATCTTCACCGGTGAAGCAAAGTTCGAGGACTTTCTAGGCGGTTCCGTCACAACCACCACCACCACGACTTGTGCACCCACACAGCTTCCGCAGTTCTCCACCGACAACGACCTATACGATTCGGAGCTGAAGACAACCATAGCAGCTTGCTTCCCTCGCGGCTTCGGCGCCGAACCAACCTCCGAGCCTCAAAAGCCCTCTCCCAAGAAAACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGTGGCGTCACCCGACATAGATGGACTGGAAGGTATGAAGCTCATCTATGGGATAACAGTTGTAGAAGGGAAGGACAGAGTCGGAAAGGAAGATATATATATATAGGTGGTTATGACAAGGAAGAGAAGGCGGCCAGAGCTTACGATCTCGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTCCCTATTTCCAACTATGAGAAGGAACTGGAGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGGAGGAAGAGCAGTGGTTTCTCTAGAGGAGCCTCTATTTACAGAGGAGTGACCAGGCACCACCAGCATGGGCGATGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACACAGGAAGAAGCTGCGGAGGCGTATGACATTGCAGCTATAAAATTCAGAGGACTAAATGCAGTGACAAACTTCGACATGAGTCGCTACGATGTAAAGAGCATTGCAAATAGCTCTCTTCCCATTGGGGGATTATCAAGCAAGAACAAAAATTCCACAGATTCTTCTTGTCTATCAGCTGATAATAGCAAAAGCCATGAGGCAATAAGTCGATCCGATGAACGAGATCCATCTTCAACAACTTCCTTTGCATCACAGCAACAACCTTCAAGCTCTACTACTACCTTAAGCTTTGCCATTCCCATCAAGCAAGACCCTTCCGATTACTGGTCCATCCTCGGCTACCATAATCCTCCTCCTCTTGATCACACCACTGCCGTCAGGAACAACAATAGTAGCACTGTACCCTTCCAAATGGACTTCTCTAATAACAGTGATAACAATAATGCATCGTTTTTCAGTGGAGTAGGAGGAGGAGGCATCTTTGTCCAAAGTGGAAGCAGTGGTTCTTCTACTGCTTCAAGTTCTTCAATCCCATTGGCTACGCCCATATTTGCCTTAAATAGTAGTAATGCTAGTAGTTATGAGAACAGCTGGATAGGAGGTGGTAGCGTGCACACATTCCAAACTCATGCAAAACCGACTCTGTTTCAAACGCCAATATTTGGAATGGAATGA 1530 0.4863 MDSSSSSPHSLAFSLSNHFPNPSPSPLSLLHSFTYPSSTPTHTEEHTTSGSNATPEATNSTVGGAANLSIFTGEAKFEDFLGGSVTTTTTTTCAPTQLPQFSTDNDLYDSELKTTIAACFPRGFGAEPTSEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRYIYIGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSSKNKNSTDSSCLSADNSKSHEAISRSDERDPSSTTSFASQQQPSSSTTTLSFAIPIKQDPSDYWSILGYHNPPPLDHTTAVRNNNSSTVPFQMDFSNNSDNNNASFFSGVGGGGIFVQSGSSGSSTASSSSIPLATPIFALNSSNASSYENSWIGGGSVHTFQTHAKPTLFQTPIFGME. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00804 509 SMART rav1_2 150 222 IPR001471 GO:0003700|GO:0006355
Seca11g00804 509 SMART rav1_2 252 316 IPR001471 GO:0003700|GO:0006355
Seca11g00804 509 SUPERFAMILY DNA-binding domain 251 312 IPR016177 GO:0003677
Seca11g00804 509 FunFam AP2-like ethylene-responsive transcription factor 251 312 - -
Seca11g00804 509 Pfam AP2 domain 150 208 IPR001471 GO:0003700|GO:0006355
Seca11g00804 509 Pfam AP2 domain 252 302 IPR001471 GO:0003700|GO:0006355
Seca11g00804 509 SUPERFAMILY DNA-binding domain 149 218 IPR016177 GO:0003677
Seca11g00804 509 MobiDBLite consensus disorder prediction 325 349 - -
Seca11g00804 509 MobiDBLite consensus disorder prediction 325 381 - -
Seca11g00804 509 Gene3D AP2/ERF domain 150 218 IPR036955 GO:0003700|GO:0006355
Seca11g00804 509 Gene3D AP2/ERF domain 252 312 IPR036955 GO:0003700|GO:0006355
Seca11g00804 509 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 72 395 - -
Seca11g00804 509 FunFam AP2-like ethylene-responsive transcription factor ANT 149 218 - -
Seca11g00804 509 MobiDBLite consensus disorder prediction 123 142 - -
Seca11g00804 509 PRINTS Ethylene responsive element binding protein signature 151 162 IPR001471 GO:0003700|GO:0006355
Seca11g00804 509 PRINTS Ethylene responsive element binding protein signature 292 312 IPR001471 GO:0003700|GO:0006355
Seca11g00804 509 ProSiteProfiles AP2/ERF domain profile. 252 310 IPR001471 GO:0003700|GO:0006355
Seca11g00804 509 MobiDBLite consensus disorder prediction 359 381 - -
Seca11g00804 509 CDD AP2 149 218 IPR001471 GO:0003700|GO:0006355
Seca11g00804 509 MobiDBLite consensus disorder prediction 26 61 - -
Seca11g00804 509 ProSiteProfiles AP2/ERF domain profile. 150 216 IPR001471 GO:0003700|GO:0006355
Seca11g00804 509 CDD AP2 251 312 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00804 Seca-Chr11 8127370 8130673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00804 106 509 AP2-EREBP Transcription Factor Family AT5G57390 56.393 4.32e-143 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca11g00804 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00804 K09285 - gmx:100797828 674.085