Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00803 ATGGCTACGGATTCGTCTTTCGAAGGTGTTGCTCTTGATCCTTCTAAATGCAGTAAACTGAGCATGGAGGAAAAAAGAGAACTTGTATATGAAGTATCCAAGTGGTCTCATGGTGCATCAGAGATGCTGCAGTCATGGAGCCGTCAAGAGATTTTGCAAATCTTGTGTGCAGAGATGGGAAAAGAAAGGAAGTATACCGGGCTTACAAAGTTGAAAATTATAGAAAACCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGCCATGAAATCGCCACAGACCCTGAATCAAGTTCTTCTCCTGCAAATGGTCAGAAACCTGCTAAAAGGCAGAGAAAAACTGAGAATCCATCTCGATTACCTGTTCCTGCAAACACTGATTCAGTCAGTAATGGTGGTGATGTGAGTAATACCATTTACTGCAAAAACTCGGCGTGCAAGGCTACCCTAAATCAAGCAGATACATTTTGCAAAAGATGTTCATGCTGCATTTGTCATCAATATGATGACAACAAGGACCCTAGCCTCTGGTTAATATGTAGCTCTGAAACTCCATTTCCTGGTGTTTCTTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCTGGAATTGGCAAAGATGGTGAGCGTCCCAAGCTTGATGGAGGCTTCTACTGTGTCTCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTGGCAAAGGATACCCGACGTGTAGACATACTTTGTTATCGTGTCTCCTTAAGCCAAAGACTTTTACAAGGGACTGAAATATATCAAGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGTCCACTGATTGGTTCACCAGTGAAGATTGGTAGAGGGATTGTGAACAGGCTTTCATCAGGACCTGAGGTTCAGAAACTCTGTGGTCTTGCTCTGGAGTCACTTGATTCGCTGCTTTCTACAAGAATCTTGTCTCAGTCATCCAATCCAACTATTCAAGATGCACATTTACTGGCTCCAAATATGGTGAGGTTTGAAGATGTTACTACAACATCCCTCACTGTTATTTTGGGTTCTGAAGATCCTTCTGGAGACAATGTTGCTGGTTACACCTTGTGGCATCGCAAAGCTGATGATGTGGACTACCCTGTGGAGCCGACTTGTACATTGCTCCTACCAAATAGAAGGTTGAGTATCAGGAGTCTACTTCCTGCTACAGAATACAGTTTCAAAGTTGTTTCCAATGATTCAAGGGAGTTGTGTACATGTGAAGTTCAAGTCTCAACTGAGCATGGTGAGGATGAAGTCCCCAATTGCTCAGCAACAGAAAGAAGTCAGAGTCCAGTAACCAACTGTAGCAGCCTTTCCAATCCATCATCAGTGGAAGATGAAACTAATAACAGTAACCCATATAGTGACCAGACCGATAATCGAGCTGATAATTATCATTCTTATCACAAGGACAGTGACAAGCTTGCTTCTGGAAATTTATCTAATGATGCAATCAACTGTTCCAATATGGGTGTAGTGGGACTTCCCACTGATGCAGATTCCTTGTCAGACAAGCAGCATGTTGTGGGAATGACTGGCTCTGTACCTAGCTCTGATGTACTAAAGCTTGAAAACAAGCATTCACCAGAGGAACAGGTTACTGAGGACATGAGCACTGATGATGGATTGAATTCCCCAGTTCTAACAGGAAGGGAGCATGTGCATGTGCATGTGCCATTAGTAGGTAGGTCAGAAGGAGGGTTGCCTAATACTCCCTGCAAGTTGGAAATACTTAAAGATGGGCCAGGAAGAAATGGGAGATCTAAATCCAGTGGCAAAGATCAAGAAAATGTATCTGGGAAAAGGGTGGGGCCCCAAGATGGAAGTACTTCCAAAAAAAGAAGTGGGGAAAGGCAAGATGAGGGCTGCGCCGCCAATGGTTTTTCAGATCGGGATTTTGAGTATTATGTGAAGGTGATTAGATGGTTAGAGTGTGAAGGACACATAGAAAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCAACCCCTCAAGAAGTAAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAGCAACTTGTAGACACCTTCTCAGAATGTATATCCAGCAAGAGAACATCAGTGGTGCCTGCAGGGTTCTGCATGAAGCTTTGGCATTGA 2226 0.4272 MATDSSFEGVALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHEIATDPESSSSPANGQKPAKRQRKTENPSRLPVPANTDSVSNGGDVSNTIYCKNSACKATLNQADTFCKRCSCCICHQYDDNKDPSLWLICSSETPFPGVSCGLSCHLECALKHDGSGIGKDGERPKLDGGFYCVSCGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEIYQELYKIVDEAVKKLEPEVGPLIGSPVKIGRGIVNRLSSGPEVQKLCGLALESLDSLLSTRILSQSSNPTIQDAHLLAPNMVRFEDVTTTSLTVILGSEDPSGDNVAGYTLWHRKADDVDYPVEPTCTLLLPNRRLSIRSLLPATEYSFKVVSNDSRELCTCEVQVSTEHGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNSNPYSDQTDNRADNYHSYHKDSDKLASGNLSNDAINCSNMGVVGLPTDADSLSDKQHVVGMTGSVPSSDVLKLENKHSPEEQVTEDMSTDDGLNSPVLTGREHVHVHVPLVGRSEGGLPNTPCKLEILKDGPGRNGRSKSSGKDQENVSGKRVGPQDGSTSKKRSGERQDEGCAANGFSDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRTSVVPAGFCMKLWH. 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00803 741 MobiDBLite consensus disorder prediction 584 647 - -
Seca11g00803 741 MobiDBLite consensus disorder prediction 604 620 - -
Seca11g00803 741 ProSiteProfiles Fibronectin type-III domain profile. 346 442 IPR003961 GO:0005515
Seca11g00803 741 CDD FN3 346 420 IPR003961 GO:0005515
Seca11g00803 741 MobiDBLite consensus disorder prediction 631 647 - -
Seca11g00803 741 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 741 IPR044514 GO:0010048|GO:0040029
Seca11g00803 741 MobiDBLite consensus disorder prediction 88 130 - -
Seca11g00803 741 MobiDBLite consensus disorder prediction 92 107 - -
Seca11g00803 741 Gene3D Immunoglobulins 327 428 IPR013783 -
Seca11g00803 741 MobiDBLite consensus disorder prediction 440 485 - -
Seca11g00803 741 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Seca11g00803 741 SUPERFAMILY Fibronectin type III 346 422 IPR036116 GO:0005515
Seca11g00803 741 CDD PHD_VIN3_plant 161 226 - -
Seca11g00803 741 MobiDBLite consensus disorder prediction 439 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00803 Seca-Chr11 8089013 8094034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00803 4 486 PHD Gene Family AT4G30200 54.633 1.06e-166 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00803 - - gmx:100794721 1336.63