Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00796 ATGGATCAGTCCTCCAGTGAGGAAAAACTATATGCTACAATTGGGGCCACTGTGTTGATGGTTTTGGGATTTCTGCTTAACCTTGCTGTAATCTTTTGGGTCATAAATTGCTGCAGAAGGGGTTGCCACAAAGATGGCAGCACAGAGTGTTCAGAATCAGACTCACAATCTGAGACATTCAACATAGACAAATTTCTTAACGACATGGAAAGAGAGAAGCTTATCAAATTTAGTTATCAACAGTTAAGGACTGCTACTCACAACTTCTCCAAAAAGTTGGGGTCAGGAGGCTTTGGAACAGTGTATTTAGGAAGTTTAAGTACTGGAGTCAATGTAGCTGTCAAGGTCCTACGTGGCCAGAGGGTTAAGAAGCAGTTCATGGCAGAGGTGAGTACAATTGGAAGAGCTCATCACTTGAATCTGGTTAGGCTCTATGGATTTTGCTTTGAATGGAAATTGAGAGCGCTAGTTTATGAGTATATGGCTAATGGTTCACTTGATAAGTATCTATTTCGTGAAGACAGGACCTTAGGATTCGAGAAGCTTCATGAGATTGCTATTGGAACAGCCAGGGGCATTGCTTACTTGCATGAAGAGTGCCCACAGAGAATAGTCCATTATGACATTAAGCCAGGAAATATTCTCTTAGATGAGAAATTTTCTCCCAAAGTTGCTGATTTTGGTTTGGCTAAGCTTTGTAATAGAGAAAACACACATATAACCATGACAGGAGGAAGAGGGACTCCAGGTTATGCTGCACCAGAGCTTTGGTTGCCATTTCCTGTGACTCATAAGTGTGATGTTTACAGTTTTGGAATGCTGTTATTTGAAATGATAGGCAGGAGAAGGAACCTTGACATTAGCCTTCAAGAAAGTAGAGAGTGGTTTCCAAGGTGGGTTTGGGAAAAATTTGATTCAGGACAACTGGGAGAGTTAAGAATAGCTTGTGGGACAGAAGAGAAATATATGGAGATAGTAGAGAGAATGACTAAGGTGGCTTTATGGTGTGTTCAGTATAGGTCAGAATTAAGACCTTTAATGAGTGCTGTTGCCAGAATGTTGGAAGGCCTAGTGGAAATTCCGAAACCTTTGAACCCTTTTCAGACCATGATGGTTGGGAGTCTTGGGACTCTTTCTATCCAACCAAATCATTCATCAGATACCACTGTTGGTTCTGAAGTGAACCAATCTACAATTTTAAATGCTACTCCTATTGTGATTCATGACAATGTTTGA 1236 0.4086 MDQSSSEEKLYATIGATVLMVLGFLLNLAVIFWVINCCRRGCHKDGSTECSESDSQSETFNIDKFLNDMEREKLIKFSYQQLRTATHNFSKKLGSGGFGTVYLGSLSTGVNVAVKVLRGQRVKKQFMAEVSTIGRAHHLNLVRLYGFCFEWKLRALVYEYMANGSLDKYLFREDRTLGFEKLHEIAIGTARGIAYLHEECPQRIVHYDIKPGNILLDEKFSPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWLPFPVTHKCDVYSFGMLLFEMIGRRRNLDISLQESREWFPRWVWEKFDSGQLGELRIACGTEEKYMEIVERMTKVALWCVQYRSELRPLMSAVARMLEGLVEIPKPLNPFQTMMVGSLGTLSIQPNHSSDTTVGSEVNQSTILNATPIVIHDNV. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00796 411 Pfam Protein tyrosine and serine/threonine kinase 89 351 IPR001245 GO:0004672|GO:0006468
Seca11g00796 411 Gene3D Phosphorylase Kinase; domain 1 61 160 - -
Seca11g00796 411 ProSiteProfiles Protein kinase domain profile. 87 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00796 411 Gene3D Transferase(Phosphotransferase) domain 1 161 363 - -
Seca11g00796 411 FunFam Putative receptor-like protein kinase 161 362 - -
Seca11g00796 411 ProSitePatterns Protein kinases ATP-binding region signature. 93 124 IPR017441 GO:0005524
Seca11g00796 411 SMART serkin_6 87 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00796 411 FunFam serine/threonine-protein kinase PBS1-like 55 160 - -
Seca11g00796 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Seca11g00796 411 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 13 364 - -
Seca11g00796 411 SUPERFAMILY Protein kinase-like (PK-like) 71 355 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00796 Seca-Chr11 8036742 8038273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00796 74 367 Receptor kinase-like Gene Family AT5G38280 43.234 1.61e-77 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Seca11g00796 PK_Tyr_Ser-Thr 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00796 - - jre:109002952 521.546