Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00789 ATGGCGGCCAAAGGGTCAATCACCCTTGAGGAAATCAAGAACGAGACTGTTGATCTGGAACGTATTCCTGTTGAGGAAGTGTTTGAGCAATTGAAATGTACCAGAGAAGGGTTGTCCTCAGAGGAGGGAACCAATCGGCTTCAAATATTTGGGCCAAACAAGCTAGAGGAGAAAAAGGAAAGCAAAATACTCAAGTTTCTCGGGTTCATGTGGAATCCTCTGTCATGGGTCATGGAAGCTGCAGCTATCATGGCAATTGCTCTTGCAAATGGTGATGGGAAGCCCCCAGATTGGCAAGATTTTGTTGGTATTGTTTGTTTGTTGCTCATAAACTCCACCATCAGTTTCATTGAAGAAAATAATGCTGGTAATGCTGCTGCTGCTCTCATGGCTGGTCTTGCTCCAAAGACAAAGGTTCTTAGAGATGGTCAATGGAGTGAGCAAGAAGCTGCAATTCTAGTCCCTGGAGACATCATAAGCATCAAACTAGGTGATATTATTCCTGCTGATGCTCGTCTTCTTGAGGGTGATCCTTTAAAGGTGGATCAATCTGCTTTGACTGGAGAGTCACTTCCAGTGAATAAGAATCCTGGGGATGAGGTTTTCTCTGGCTCAACTTGTAAACAAGGTGAAATTGAAGCTGTTGTCATTGCAACTGGTGTCCACACATTTTTTGGGAAAGCAGCTCACCTGGTGGATAGTACCAACCAAGTTGGACATTTCCAGAAGGTGCTTACAGCAATTGGAAACTTCTGTATTTGTTCCATTGCAGTTGGTATGTTGGCTGAGATCATAGTCATGTACCCAATTCAGCACCGAAAGTACAGAGATGGAATTGACAACCTTTTGGTCCTCTTAATTGGAGGAATTCCCATTGCTATGCCCACTGTGTTGTCTGTGACAATGGCCATTGGTTCTCACAGGCTTTCTCAGCAAGGTGCTATCACCAAGCGAATGACTGCCATTGAAGAAATGGCTGGAATGGATGTCCTTTGCAGTGACAAAACGGGTACACTAACACTTAACAAGTTGACTGTTGACAAGAACTTGATTGAGGTCTTTGCAAAGGGTGTAGACAAGGAACATGTGTTGCTTCTTGCTGCAAGGGCTTCCAGGACTGAAAACCAGGATGCAATAGATGCTGCTGTTGTTGGAACTCTTGCTGACCCAAAAGAGGCAAGGGCTGGGATAAGAGAAGTGCACTTCTTCCCATTCAATCCTGTTGACAAGAGAACTGCTTTGACTTACATTGATTCTGATGGAAATTGGCACCGTGCAAGCAAAGGTGCTCCTGAGCAGATAATGACCCTATGTAACCTCAGGGATGATGCTAAAAAGAAGATCCATGCTATCATTGACAAGTTTGCAGAGAGAGGACTTCGTTCACTTGCTGTTGCTAGACAGGAAGTTCCTGAGAAAACAAAAGAAAGCGCTGGTGGTCCATGGCAGTTTGTTGGTTTGTTGTCACTGTTTGACCCCCCAAGACATGACAGTGCTGAAACTATTCGTAGAGCACTTCATCTTGGTGTAAATGTGAAGATGATTACTGGTGATCAACTTGCCATAGCTAAGGAGACTGGCAGGAGGCTTGGGATGGGAACTAATATGTACCCATCTGCTACCTTGCTTGGTCAAGACAAAGATTCAAGTATTGCTGCACTTCCAGTAGAAGAGCTGATTGAGAAGGCAGATGGATTTGCTGGAGTATTTCCAGAGCACAAATATGAAATTGTAAAGAAGTTGCAGGAGAGGAAGCACATTTGTGGAATGACTGGAGATGGTGTCAACGATGCTCCTGCTTTGAAGAAGGCTGATATCGGAATTGCTGTTGCTGATGCTACTGATGCTGCAAGAGGTGCTTCTGATATTGTCTTGACAGAACCAGGATTGAGTGTTATTATTAGTGCAGTCTTAACTAGCAGAGCTATTTTCCAAAGAATGAAAAACTACACGATATATGCAGTATCCATCACAATCCGTATAGTGTTTGGATTCATGTTCATTGCATTGATCTGGAAATTCGACTTCTCTCCTTTCATGGTTTTGATTATTGCCATTCTAAATGATGGAACAATCATGACAATTTCAAAAGATAGGGTGAAGCCATCTCCCCTGCCTGATAGCTGGAAACTGAAAGAAATATTTGCTACTGGGATTGTTCTTGGAAGTTACTTAGCACTTATGACTGTCATATTCTTCTGGGCAATGAAAGAAACTCATTTCTTCCCTGTAAGAATTTTTAACTATACTATATTCAAGTGCTTGGATAAATTTGGAGTTAGACACCTTACTCATGATGAAATGATGTCTGCTTTATATCTACAAGTCAGTATAGTTAGCCAGGCTCTTATATTTGTAACCCGTTCCCGTAGTTGGTCCTTTGTTGAACGCCCTGGAATGTTATTAGTCTGTGCTTTCATTATTGCTCAACTGATTGCTACAGTCATAGCAGTATATGCTGATTGGGGATTCGCAAAGGTTAAAGGAATTGGTTGGGGTTGGGCAGGAGTCATCTGGCTCTACAGTGTTGTCTTCTATGTTCCACTTGATTTGATGAAGTTTGCCATCCGCTACATATTGAGTGGCAAGGCTTGGTTAAATCTGCTTGAGAACAAGACTGCCTTCACCACCAAGAAAGACTATGGTAAGGAAGAGAGGGAAGCTCAGTGGGCTCTTGCTCAAAGGACCCTGCATGGACTTCAACCACCAGAAACTTCAGGTATTTTCAATGAAAAGAGCAGCTACAGAGAACTCTCTGAGATTGCTGAGCAGGCCAAGAGAAGAGCTGAAGTTGCAAGGCTTCGTGAGCTTCACACACTTAAGGGACATGTGGAGTCTGTGGTGAAGTTGAAAGGTCTGGACATTGATACAATTCAGCAGCACTACACAGTGTGA 2895 0.4318 MAAKGSITLEEIKNETVDLERIPVEEVFEQLKCTREGLSSEEGTNRLQIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGDGKPPDWQDFVGIVCLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGQWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPVNKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDKEHVLLLAARASRTENQDAIDAAVVGTLADPKEARAGIREVHFFPFNPVDKRTALTYIDSDGNWHRASKGAPEQIMTLCNLRDDAKKKIHAIIDKFAERGLRSLAVARQEVPEKTKESAGGPWQFVGLLSLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSATLLGQDKDSSIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGSYLALMTVIFFWAMKETHFFPVRIFNYTIFKCLDKFGVRHLTHDEMMSALYLQVSIVSQALIFVTRSRSWSFVERPGMLLVCAFIIAQLIATVIAVYADWGFAKVKGIGWGWAGVIWLYSVVFYVPLDLMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETSGIFNEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV. 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00789 964 Pfam Cation transporter/ATPase, N-terminus 22 84 IPR004014 -
Seca11g00789 964 FunFam Plasma membrane ATPase 344 491 - -
Seca11g00789 964 Gene3D - 344 491 IPR023299 GO:0000166
Seca11g00789 964 PANTHER CALCIUM-TRANSPORTING ATPASE 20 896 - -
Seca11g00789 964 Coils Coil 915 935 - -
Seca11g00789 964 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Seca11g00789 964 Pfam E1-E2 ATPase 134 311 - -
Seca11g00789 964 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 860 IPR023298 -
Seca11g00789 964 NCBIfam plasma-membrane proton-efflux P-type ATPase 37 819 IPR006534 GO:0008553|GO:0016020|GO:0120029
Seca11g00789 964 FunFam Plasma membrane ATPase 135 219 - -
Seca11g00789 964 Gene3D - 329 628 IPR023214 -
Seca11g00789 964 FunFam Plasma membrane ATPase 483 639 - -
Seca11g00789 964 SUPERFAMILY Calcium ATPase, transduction domain A 135 232 IPR008250 -
Seca11g00789 964 ProSitePatterns E1-E2 ATPases phosphorylation site. 334 340 IPR018303 -
Seca11g00789 964 Gene3D - 135 219 - -
Seca11g00789 964 SFLD Haloacid Dehalogenase 314 642 - -
Seca11g00789 964 Gene3D - 97 828 - -
Seca11g00789 964 Gene3D - 913 964 - -
Seca11g00789 964 PRINTS H+-transporting ATPase (proton pump) signature 591 607 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g00789 964 PRINTS H+-transporting ATPase (proton pump) signature 563 579 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g00789 964 PRINTS H+-transporting ATPase (proton pump) signature 448 466 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g00789 964 PRINTS H+-transporting ATPase (proton pump) signature 622 647 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g00789 964 PRINTS H+-transporting ATPase (proton pump) signature 773 794 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g00789 964 FunFam ATPase 4 plasma membrane-type 577 828 - -
Seca11g00789 964 Pfam haloacid dehalogenase-like hydrolase 328 605 - -
Seca11g00789 964 SUPERFAMILY HAD-like 328 638 IPR036412 -
Seca11g00789 964 PRINTS P-type cation-transporting ATPase superfamily signature 486 497 - -
Seca11g00789 964 PRINTS P-type cation-transporting ATPase superfamily signature 508 518 - -
Seca11g00789 964 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Seca11g00789 964 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Seca11g00789 964 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Seca11g00789 964 PRINTS P-type cation-transporting ATPase superfamily signature 332 346 - -
Seca11g00789 964 CDD P-type_ATPase_H 37 854 IPR006534 GO:0008553|GO:0016020|GO:0120029
Seca11g00789 964 NCBIfam HAD-IC family P-type ATPase 566 680 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g00789 964 NCBIfam HAD-IC family P-type ATPase 104 351 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g00789 964 SFLD p-type atpase 314 642 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00789 Seca-Chr11 7927002 7933946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00789 8 964 Primary Pumps ATPases AT4G30190 83.065 0.0 1626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00789 K01535 - gmx:100816905 1749.56