Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00788 ATGGAGGCTCAACCAGCTAAACGCAGACGTGTTTACTCTTTGGAACCAAACAAAATAGTAATGCAATCCATTTTTGCTAGAAATTATTTGAACTATTTAGTTCCAGCCTTGATGAAGATAAAGGCAAAGAGTTCTGCAGAAGATAATAGCAGGCATTGTGACATTAAGAATGTTAAGTATGAAGTTGACATGGCAATGGTGTTCTCAGCACAAGGCTTTGCATGGAGTAATGGCCTTAAAGTCAAGCTTGAAAGAGATCATGGCAATGTAGCTACAAGCACTACTAGCTTTCTGGCTAGTCATGAAGGTTCATCAAGGATTTATGACCACCAAAATGAAGTTGTCACACAGGATTATTTCTCTTCAAACCCTAGAACAAAGTCTCAATTAGACATTTTGAAAAAAGATTTAGCCAGAGAAGATAATGAAGATGAGGACAAAATGAAGAGCTTGAGAATGTTAATACCTGGAGGAGAAGAAATGTGTGATGAACAAATGGTTGCTGAACTAGAGAGTTACATAAGATGTTTGCAAATGCAGGTGAATGTTCTTCAATGCCTACTAGCTGAGCCATAA 576 0.3767 MEAQPAKRRRVYSLEPNKIVMQSIFARNYLNYLVPALMKIKAKSSAEDNSRHCDIKNVKYEVDMAMVFSAQGFAWSNGLKVKLERDHGNVATSTTSFLASHEGSSRIYDHQNEVVTQDYFSSNPRTKSQLDILKKDLAREDNEDEDKMKSLRMLIPGGEEMCDEQMVAELESYIRCLQMQVNVLQCLLAEP. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00788 191 CDD bHLH_AtIBH1_like 133 188 IPR044549 GO:0006355
Seca11g00788 191 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 21 188 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00788 Seca-Chr11 7913332 7913907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00788 7 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30180 30.769 4.79e-20 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00788 - - aprc:113852314 227.254