Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00762 ATGTCCTTCTTTATACGAAGGTTGACAAATAAATATATTAATATGCGGGATAGTGAGAAGAAGTTAAAGAATGGAAGATCTAAAAAATCCAGTCATTTGAAGGCACGCACAAAGTGCCAAGGGAAGAAGCACAAACTGGAATCAAAATCTCAAACACACAGTGTTGGGAATAATATATCAAGGAAGAGAGTTACTGACTCTTCCCACAAGGGGCCACACAAGGATTCTTCAAATAAGAAATTGATTATTCGACAGAAATTACATAAAACTGGCAGAAAATCTTCACAGAAGCCATCCTCAAAGCTACAAGACAAGAAAGTTTCTCTTAGTTCTAGAACAGAGGGAAAAGATGCTGAGGGAGAGGTGAAACATCAAAAAATAAGGAGAAAGAGAAAGAAGAAGAGGAAAAGGAATAATGTAGACCTTGATGAAGCTTCACGCCTGCAGAGGAGAACAAGGTACCTTTTAATCAAATTGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGCCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCACGAAAGCAGATTTTAAAATGTAAACTTGGTATTCGTGATGCTATTCACCAGTTGGATTCTCTTAGTTCCCTGAGTAGCATTGAAGATTCTGCCTTGGCTCCAGATGGATCTGTTCACCATGAACATATATTCTGTGCAAAGTGCAAGCTGCATGAAGCTCTTCCAGATAATGACATTATACTCTGTTATGGTACATGTAATCGTGCTTTTCACCAAAAATGTCATGATCCTCCTCTAGACACTGAAAATATTCCTCCAGGAGAGCAGGGCTGGCTTTGTAAATTTTGTGAGTGTAAGATGAAAATACTGGAGGCAATGAATGCCCATCTTGGAACTCGCTTCTCCTTTAACAGTAATTGGCAGGATGTATTCAAAGAAGAAGCTGCTCTACCTGATGGTGATACTGCATTACTCAATCCTGAAGAAGAATGGCCATCAGATGATTCTGAAGATGATGATTATAATCCAGAGAGGAGAGAAGATGGTCACGTTATCAACACAGAAGGAACTGATGATGATCATGCATCTGATGATTTAAGCTGTTCCACTAGTCTGTGTTCTTCCGATGGTGAATGTTCTCTGGTAGATGAAGGTGGCAGTCATGAATATTTTTCTGTCAATAGCAGCATAGATTCTGATGAGTCTGAGGAAAAAGCTTGTGGCCCAAGACAGCGAAAAGCTGTTGACTACAAGAAGCTTTATGACGAAATGTTTGGGAAGGATGTTCCTGCATGTGAGCAAGTGAGTGAAGATGAAGACTGGGGTCCTAGCAAAAGAAAGAGAAGAGAAAAGGAGTCTGATGCTGTTGATACTCTTATGACGTTGCATGAAAGTGAGAATAAGCATCCCAATAATGAGCACAACAACATGACAAGAAGGGATTCTTCAGACAAAAATGTCAGAAGGCATTGTTTTAGGATTCCACGCGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAACGAACTTCCTCCAAGATCTATTAAGGAGGGTCTTTCAAAAGAGTTGGGACTTGATACTGAGAAGGCACTTACTGTCTCCAACTGTATCTCTTTTCTATCTTCATCTGGATTTACCTATGGAGTTGCTTTTGGTGCATATTATATTGTCAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTCAAAACAAGAAAGCAGCAAGCAGGAGGAGCAGATCAGCTTCCGAGTATTACTTCTAGGAAGAACTCTAATCAGGAGAAAGCTGATCCTTTGAAATCAAAGACCTCAGGAGTTACTTTGCTGGATTCCGCAAAGAATGTTGAAAATGTTACTGGTAGAAAGAAAATAAAGCAACAAAAAATGTTGCCACTCCAGCCAATAGAAAATGGCAATAAGGACTTTAAGGAGGTCAGTGATGATGTGAGCTTGAAGAAGCTGTTGAAAGAGAGAAAGAGGAGGGTAAATTTTACATTTGAAGGAGACTCTGAGGCTGCAGAGTTGGAACTTGAAAGACTAAGCAAATTGAAGATTAAAGTAGATAGTATGAAGCAAAAATTAATTGGAATTCAAAATAAGTGTTCAGATGAACCTCCTTCTAATGAACCATCTATTATATATGTACCCACAGCTGTATTAAGGGAAAAGGTTGACTTATAA 2196 0.3934 MSFFIRRLTNKYINMRDSEKKLKNGRSKKSSHLKARTKCQGKKHKLESKSQTHSVGNNISRKRVTDSSHKGPHKDSSNKKLIIRQKLHKTGRKSSQKPSSKLQDKKVSLSSRTEGKDAEGEVKHQKIRRKRKKKRKRNNVDLDEASRLQRRTRYLLIKLKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCKLGIRDAIHQLDSLSSLSSIEDSALAPDGSVHHEHIFCAKCKLHEALPDNDIILCYGTCNRAFHQKCHDPPLDTENIPPGEQGWLCKFCECKMKILEAMNAHLGTRFSFNSNWQDVFKEEAALPDGDTALLNPEEEWPSDDSEDDDYNPERREDGHVINTEGTDDDHASDDLSCSTSLCSSDGECSLVDEGGSHEYFSVNSSIDSDESEEKACGPRQRKAVDYKKLYDEMFGKDVPACEQVSEDEDWGPSKRKRREKESDAVDTLMTLHESENKHPNNEHNNMTRRDSSDKNVRRHCFRIPRDAVEKLRQVFAENELPPRSIKEGLSKELGLDTEKALTVSNCISFLSSSGFTYGVAFGAYYIVSKWFKNARYLALKTRKQQAGGADQLPSITSRKNSNQEKADPLKSKTSGVTLLDSAKNVENVTGRKKIKQQKMLPLQPIENGNKDFKEVSDDVSLKKLLKERKRRVNFTFEGDSEAAELELERLSKLKIKVDSMKQKLIGIQNKCSDEPPSNEPSIIYVPTAVLREKVDL. 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00762 731 SMART PHD_3 235 288 IPR001965 -
Seca11g00762 731 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Seca11g00762 731 SMART HOX_1 491 580 IPR001356 GO:0003677
Seca11g00762 731 MobiDBLite consensus disorder prediction 17 144 - -
Seca11g00762 731 SUPERFAMILY FYVE/PHD zinc finger 227 293 IPR011011 -
Seca11g00762 731 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
Seca11g00762 731 MobiDBLite consensus disorder prediction 332 346 - -
Seca11g00762 731 MobiDBLite consensus disorder prediction 25 43 - -
Seca11g00762 731 MobiDBLite consensus disorder prediction 435 490 - -
Seca11g00762 731 Gene3D - 474 582 - -
Seca11g00762 731 MobiDBLite consensus disorder prediction 396 415 - -
Seca11g00762 731 MobiDBLite consensus disorder prediction 107 124 - -
Seca11g00762 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 284 IPR013083 -
Seca11g00762 731 MobiDBLite consensus disorder prediction 582 608 - -
Seca11g00762 731 MobiDBLite consensus disorder prediction 322 371 - -
Seca11g00762 731 Pfam PHD-finger 235 290 IPR019787 -
Seca11g00762 731 MobiDBLite consensus disorder prediction 63 82 - -
Seca11g00762 731 CDD PHD_PRHA_like 235 287 IPR045876 -
Seca11g00762 731 SUPERFAMILY Homeodomain-like 486 577 IPR009057 -
Seca11g00762 731 FunFam pathogenesis-related homeodomain protein-like 227 287 - -
Seca11g00762 731 MobiDBLite consensus disorder prediction 347 369 - -
Seca11g00762 731 Coils Coil 678 705 - -
Seca11g00762 731 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 32 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00762 Seca-Chr11 7606347 7611110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00762 134 581 Homeobox Transcription Factor Family AT4G29940 54.248 2.25e-152 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca11g00762 PHD 1.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00762 - - gmx:100817639 969.918