Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00753 ATGGAGAATATTGGTGACGAGTACAAGCATTATTGGGAGACCAACATGTTCTACCAAACACAAGACTTTGACAGCAGCTGGGGATTAGATTTAGATGAGGCGTTCTCCGGCTACTATGATTCGAGTTCCCCTGACGGTGGCGCTTCGTCGGTGGCATCGACTAAGAACATTGCCGCTGAGAGGAATAGAAGGAAGAAGCTGAACGAAAGGCTTTTTGCACTTAGAGCAGTGGTTCCCAATATTAGCAAGATGGATAAGGCTTCTATCATCAAGGATGCTATTGACTACATCCACCACTTGCATGACCAGGAGAAGACAATTCAAGCTCAGATCATCGATCTTCAATCTTCTGCACCACCTGCCACCGATCATCACCACGACCTTCCTATTTTGCTCAGGTCCAACAAGAAGCAGAGAGAAAAACAACTTCATAATTCTCTGCTCACTTCAAGAAATTATTCCCCAATTGAAATTATCGAGCTCAGGGTTACATACATGGGTGAGAAAACGTTCGTGGTGAGCTTGACATGCTGCAAGAGGACAGACACAATGGTAAAACTGTGTGAGGTGTTTGAATCTTTGAAGCTCAAGATCATCACAGCCAATATCATTTCTTTTTCAGGAACGCTTTTCAAGACAGTCTTCATCGAGGCAGAGGAGGAAGAGAAAGATCTTTTGCAGATAAAAATCCAGAGTGCCATTTCGGCTCTTAATGGTCCTCAAAGCCCAATGAGCATCTGA 741 0.4413 MENIGDEYKHYWETNMFYQTQDFDSSWGLDLDEAFSGYYDSSSPDGGASSVASTKNIAAERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIDYIHHLHDQEKTIQAQIIDLQSSAPPATDHHHDLPILLRSNKKQREKQLHNSLLTSRNYSPIEIIELRVTYMGEKTFVVSLTCCKRTDTMVKLCEVFESLKLKIITANIISFSGTLFKTVFIEAEEEEKDLLQIKIQSAISALNGPQSPMSI. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00753 246 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 51 232 - -
Seca11g00753 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 116 IPR036638 GO:0046983
Seca11g00753 246 SMART finulus 57 106 IPR011598 GO:0046983
Seca11g00753 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Seca11g00753 246 Coils Coil 216 236 - -
Seca11g00753 246 Gene3D - 49 117 IPR036638 GO:0046983
Seca11g00753 246 Pfam Helix-loop-helix DNA-binding domain 55 101 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00753 Seca-Chr11 7540797 7546085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00753 1 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 58.744 3.55e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g00753 HLH 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00753 - - gmx:100817978 324.709