Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00743 ATGAATTTGTCCAATGGTCGTTCTTCTCCTTGCGGCCAGACGCAGCGTGATTTAGAGGCTGGGTCTCCCAGTAGCAGCTCCCCTGATTTTGATGGCGGAGAAGACAATTCCGATCCATTTGATATTACCAGAACAAAGAATGCTTCCATTCAAAGACTCAAGCGTTGGAGGCAAGCTGCGCTTGTGCTTAACGCTTCTCGTCGATTTCGTTACACCTTGGATTTGAAGAAAGAAGAAGAGAGGAAGCAAATATTGAAATTGGTTACAGTGCATGCACGAGTTATTCAAGCAGCATATCGTTTCAAGGAAGCTGAGAAAGTGAATGGATTAGGAACCATAGTACCACCTTCAAGCTCCAGTGGAGAATTTTCAATTGGACAAGAGAAGCTTTCTTCAATCTCAAGGGAGCATGATACTACTGCTCTGCGGGAATATGGAGGGGTTGTAGGGTTGTCACATTTGTTGAAAACCAATTTAGAGAAGGGGATTCAAGGTGATGATGCTGACTTGGTAAAACGAAGGAATACATTTGGTTCCAACAACTACCCTCGAAAGAAAGGAAGAAGTATTTTGATGTTTATCTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCCGCCATAGCTTCATTAGCACTGGGGATAAAATCTGAGGGCATTAAGGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAGCATAAAAGAAACATACATTTGGAGGTCATTAGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTAGGTGATGTTATACCCCTAAATATTGGTAACCAGGTCCCTGCCGATGGAATTTTAATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTTGATAAGCATTCTAAGGAACCTTTTCTGATGTCTGGATGTAAAGTTGCAGATGGAAGTGGTACTATGCTGGTAACTGCTGTTGGGATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGATACTGGTGAAGAAACACCTTTGCAGGTACGCTTAAATGGTGTTGCCACCTTCATTGGTATTGCTGGACTCTCTGTGGCTGCCATTGTTCTGATTGTGCTACTGGCCAGATATTTCTCTGGGCATACTAAAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAGACCAGGGTTGGTGATGCTATTGATGGAGCAATTAAAATAGTCACTGTTGCGGTTACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTCCCTTTAGCAGTTACCTTAACTCTTGCCTATTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCGGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGAAGATTGTTCCACCTGACAAAAAGTCACAGCTCTCTCCAATGCTCTGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTTTATGTACCTGAGAGTGGTAATGGTGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACAGTGGGGAATTCAGACTGACTCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATCGTCCTTGCCTGCTGTACTGGGTATATTGATACAAATGATCAGTTGGTGGAAATGGATGAAGAGAAGATGACAGTTTTTAAAAAAGTTATTGAAGATATGGCTGCTGATAGTCTACGTTGTGTTGCCATTGCATATAGATTATATGAAATGGAGAATGTTCCAACTAGTGAAGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTCATTTTACTGGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTCAAAGATGCAGTGCAGCTTTGCCAAAAAGCTGGGGTTAAGAAATCAGCAGCAGATTTAAGGTACCAAGATGGAGACATACTGTTTAGCTCCAACCGAGGTTATGCCTCGGTGTATTCCAATCTATCTCTATCAGATTTTTTATTCAGAACAAGAGGCATAAAACTGAAAACTGCTCTTGATAAAATCTCTTCCTCTAAAGAAAAGGTCAGAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTAGTTCATCTGATGATGCTACAGAGCCAAACATTATTGAAGGAAAAACATTCCGTGCCTTGACAGATGAAGAGAGAGAAGAAATTGTTGAAAGGATATCGGTTATGGGAAGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCAGCACTACATGAGGCCGATATAGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGACATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTGTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCTCTTGTTATAAATGTTGTTGCTGCATTTTCCTCTGGCGATATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCACTAGCCTTGGCAACTGAACCACCGACTGATCACCTTATGGATCAGCTTCCAGTGGGTCGAAGGTCAAAATTTTCAGCTTTTTTGTTTGGAACTTGTGTCTTATTGGCTTTACAGAGAACCTCTTGTAACAAATGTTATGTGGAGGAATCTGCTGATACAGGCAATGTACCAAGTGTCCGTCTTGCTTATACTCAATTTCCGAGGCAGGAGCATACTGAGTCTGAGGCACGAGACCAACGCAGTCAAAGTGAAGAACACTCTGATATTCAATGCATTTGTTCTTTGTCAAAAAATATTCTTCCAAAACTGCAGGTTTTTAATGAATTTAATGCACGAAAGCCAGACGAGTTCAACATATTCAAGGGGGTTACCAGAAACTACCTCTTCATGGGGATAGTGGGATTAACTATTGTGCTTCAGATTGTCATCATTGAATTTCTTGGAAAGTTCACTAAAACAGTCAAGCTTAATTGGAAGCAGTGGCTCATCTCTGTCATTATAGGATTTATCAGCTGGCCTCTTGCTGTGGTTGGAAAACTGATACCAGTACCAGCGACTCCCATGAATAACTTCTTTCGAATATTTCGTTGTGGAAGAACTTAA 3369 0.4159 MNLSNGRSSPCGQTQRDLEAGSPSSSSPDFDGGEDNSDPFDITRTKNASIQRLKRWRQAALVLNASRRFRYTLDLKKEEERKQILKLVTVHARVIQAAYRFKEAEKVNGLGTIVPPSSSSGEFSIGQEKLSSISREHDTTALREYGGVVGLSHLLKTNLEKGIQGDDADLVKRRNTFGSNNYPRKKGRSILMFIWDACKDLTLIILMVAAIASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVDKHSKEPFLMSGCKVADGSGTMLVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIAGLSVAAIVLIVLLARYFSGHTKNPDGSVQFIAGKTRVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKKIVPPDKKSQLSPMLCSLLIEGVAQNTNGSVYVPESGNGVEVSGSPTEKAILQWGIQTDSEIHIHWKGAAEIVLACCTGYIDTNDQLVEMDEEKMTVFKKVIEDMAADSLRCVAIAYRLYEMENVPTSEEELAHWSLPEDDLILLAIVGLKDPCRPGVKDAVQLCQKAGVKKSAADLRYQDGDILFSSNRGYASVYSNLSLSDFLFRTRGIKLKTALDKISSSKEKVRMVTGDNVKTAKAIAVECGILSSSDDATEPNIIEGKTFRALTDEEREEIVERISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALVINVVAAFSSGDIPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDQLPVGRRSKFSAFLFGTCVLLALQRTSCNKCYVEESADTGNVPSVRLAYTQFPRQEHTESEARDQRSQSEEHSDIQCICSLSKNILPKLQVFNEFNARKPDEFNIFKGVTRNYLFMGIVGLTIVLQIVIIEFLGKFTKTVKLNWKQWLISVIIGFISWPLAVVGKLIPVPATPMNNFFRIFRCGRT. 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00743 1122 Gene3D - 498 509 IPR023299 GO:0000166
Seca11g00743 1122 Gene3D - 864 1094 - -
Seca11g00743 1122 Pfam Cation transporting ATPase, C-terminus 903 1103 IPR006068 -
Seca11g00743 1122 Pfam E1-E2 ATPase 266 466 - -
Seca11g00743 1122 PRINTS Sodium/potassium-transporting ATPase signature 481 502 - -
Seca11g00743 1122 PRINTS Sodium/potassium-transporting ATPase signature 890 911 - -
Seca11g00743 1122 PRINTS Sodium/potassium-transporting ATPase signature 231 251 - -
Seca11g00743 1122 Pfam haloacid dehalogenase-like hydrolase 726 832 - -
Seca11g00743 1122 Gene3D - 565 663 IPR023299 GO:0000166
Seca11g00743 1122 PANTHER CATION TRANSPORTING ATPASE 118 566 - -
Seca11g00743 1122 FunFam Plasma membrane calcium-transporting ATPase 2 717 863 - -
Seca11g00743 1122 FunFam Calcium-transporting ATPase 9 plasma membrane-type 342 512 - -
Seca11g00743 1122 Pfam Ca2+-ATPase N terminal autoinhibitory domain 38 80 IPR024750 GO:0005516
Seca11g00743 1122 FunFam Calcium-transporting ATPase 243 364 - -
Seca11g00743 1122 NCBIfam HAD-IC family P-type ATPase 429 512 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g00743 1122 NCBIfam HAD-IC family P-type ATPase 784 898 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g00743 1122 NCBIfam HAD-IC family P-type ATPase 233 402 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g00743 1122 MobiDBLite consensus disorder prediction 1 42 - -
Seca11g00743 1122 SUPERFAMILY HAD-like 725 923 IPR036412 -
Seca11g00743 1122 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Seca11g00743 1122 Gene3D - 196 484 - -
Seca11g00743 1122 MobiDBLite consensus disorder prediction 1 32 - -
Seca11g00743 1122 FunFam Calcium-transporting ATPase 196 253 - -
Seca11g00743 1122 SUPERFAMILY Calcium ATPase, transduction domain A 266 361 IPR008250 -
Seca11g00743 1122 SMART Cation_ATPase_N_a_2 144 218 IPR004014 -
Seca11g00743 1122 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 668 IPR023299 GO:0000166
Seca11g00743 1122 Gene3D - 169 364 - -
Seca11g00743 1122 Pfam Cation transporter/ATPase, N-terminus 147 213 IPR004014 -
Seca11g00743 1122 PRINTS P-type cation-transporting ATPase superfamily signature 733 743 - -
Seca11g00743 1122 PRINTS P-type cation-transporting ATPase superfamily signature 818 837 - -
Seca11g00743 1122 PRINTS P-type cation-transporting ATPase superfamily signature 312 326 - -
Seca11g00743 1122 PRINTS P-type cation-transporting ATPase superfamily signature 842 854 - -
Seca11g00743 1122 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Seca11g00743 1122 FunFam Calcium-transporting ATPase 48 104 - -
Seca11g00743 1122 Gene3D - 48 104 - -
Seca11g00743 1122 Gene3D - 724 863 IPR023214 -
Seca11g00743 1122 Gene3D - 485 497 IPR023214 -
Seca11g00743 1122 SUPERFAMILY Calcium ATPase, transmembrane domain M 147 1105 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00743 Seca-Chr11 7394095 7409514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00743 8 1121 Primary Pumps ATPases AT4G29900 61.260 0.0 1353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00743 K01537 - gmx:100790157 1565.82