Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00729 ATGTATGGGATGGGGAGCTGTTGGAGTCTTACATCAGCTTCTTCGGGTCACTCCAACTCCAACACTAACACTGCCGGCGACTATCAACTAGGGAGCTGTCAGTTTTGTACTGATCTCAGCAATACTACTAGTAGTACATCTCTTTGGGGCTCTCAGAATAGCCAGATCACTGGAGTAAGATCAGATCAAAAGGAAATTCCTTATGGGCAGATTTTGAATGCTGCAAACTTGAGAGTTTTTACTTTGGCAGAACTGAAGGCAGCCACTAAGAATTTCAGAGATGACACTGTTTTAGGTGAGGGAGGTTTTGGTAGAGTATACAAAGGTTTTATTAAGGAGAGAGGTGAGGTAATGCCTATTGCTGTCAAGAAATTGATTTCTGGAAGTAGTTGGCAAGGAGCTGAGGAATGGCAGAAAGAGGTGAATTTTTTAGGAAGGCTTTCTCATCCCAATCTCATAAAGTTGTTAGGCTTCGGGCAAGAGGACAGTGAGCTGTTCCTGGTATATGAATTTATGCAACGGGGCAGCTTTGATAACCACCTATATGGAAGAGGTGCAAACATTCAGCCACTATCGTGGGACACAAGGCTAAAGGTTATGATTGGAGCAGCCAAGGCAGTGGCTTTCCTGCACTCATTAGAGAATAAAATTATATATAGAGATCTCAAGACTTCAAATATATTACTTGACAGTACATACACAGCTAAGTTATCGGACTTTGGCTTAGCCAGATATGGTCCTTCTGGTGATGAGACTCACGTAACAACGCGGGTTATGGGAACAGGTGGCTATGCTGCTCCTGAATACGTTGCCACAGGTCACTTGTATGTAAAATCTGATGTGTATGGATTTGGGATTATTTTGGTGGAGATGCTAACTGCCAAGAAGATACGTGATATAATGCCCCTTGGTCAGCAAAAGTTCTTATTGGATTGGCTCAAATCAAATCTATTAAATAGAGGGAAAATGAGAAGGACTATGGATGCAAAGTTGGAAGGCAAGTATCCACCCAACTTAGCTTCACAAGTAGCTCAATTAACTCTCAAATGCCTCCAAGAAGACCCCAAAATCAGGCCATCAATGCAACAAGTTGTTGAAACATTGGAACAGATTGAAGCAGCCAATGACAAACCAGCTAACAATAACAATAGAAACCGTGCTCGGGCACTTCAACGACATGGCCAGCCAGATGATGGTTAA 1200 0.4258 MYGMGSCWSLTSASSGHSNSNTNTAGDYQLGSCQFCTDLSNTTSSTSLWGSQNSQITGVRSDQKEIPYGQILNAANLRVFTLAELKAATKNFRDDTVLGEGGFGRVYKGFIKERGEVMPIAVKKLISGSSWQGAEEWQKEVNFLGRLSHPNLIKLLGFGQEDSELFLVYEFMQRGSFDNHLYGRGANIQPLSWDTRLKVMIGAAKAVAFLHSLENKIIYRDLKTSNILLDSTYTAKLSDFGLARYGPSGDETHVTTRVMGTGGYAAPEYVATGHLYVKSDVYGFGIILVEMLTAKKIRDIMPLGQQKFLLDWLKSNLLNRGKMRRTMDAKLEGKYPPNLASQVAQLTLKCLQEDPKIRPSMQQVVETLEQIEAANDKPANNNNRNRARALQRHGQPDDG. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00729 399 MobiDBLite consensus disorder prediction 372 389 - -
Seca11g00729 399 Gene3D Transferase(Phosphotransferase) domain 1 172 395 - -
Seca11g00729 399 MobiDBLite consensus disorder prediction 372 399 - -
Seca11g00729 399 ProSiteProfiles Protein kinase domain profile. 92 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00729 399 SMART serkin_6 92 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00729 399 PANTHER OS01G0588500 PROTEIN-RELATED 42 372 - -
Seca11g00729 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Seca11g00729 399 Pfam Protein kinase domain 93 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00729 399 ProSitePatterns Protein kinases ATP-binding region signature. 98 124 IPR017441 GO:0005524
Seca11g00729 399 FunFam receptor-like protein kinase FERONIA 55 171 - -
Seca11g00729 399 SUPERFAMILY Protein kinase-like (PK-like) 71 368 IPR011009 -
Seca11g00729 399 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 172 382 - -
Seca11g00729 399 Gene3D Phosphorylase Kinase; domain 1 51 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00729 Seca-Chr11 7222261 7225473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00729 70 376 Glycoside Hydrolase AT3G07070 42.532 1.17e-82 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca11g00729 Pkinase 7.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00729 - - gmx:100813304 507.679