Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00728 ATGGGGAACTGTTGGAGTTTACAATCAAGTTCTCCAGGCGATCGTCCAAATTCCAATACTGCCTATGACCCCAACAATCAATCAGGTAGCACTCAGTTTTCTTTTGGTGTCAGCAAGAGGAGATTAATACAGAGTGACAATTCTACTTCTCTTGGGCGTAGCAGCCACTCTGGAGGAACCAGTCGACTCTTCAGTAAGAACTACTCAACTAGCAATAACACAAGTACATCCCTTTGGGGCTCTGAGAATAGCCAAGCCTCTAGAGTAAGAGATGAAGAGGGATTTCCTGATGGTCAGATCTTGGATGCTGCAAACTTGAAAGTTTTTACTTTAGCAGAACTAAAGGCAGCCACTAGAGATTTCAGAGCTGATACTGTGTTAGGAGAGGGGGGCTTTGGTACAGTATACAAAGGTTCCATTAAGGATGGAGAGGCATCAAAAAGAGGTGAAGAATTGACTATTGCCATCAAGAAATTGAATTCTGACAGCAAGCAAGGAATTGCGGAATGGGTGTCAGAGGTGAATTTCTTAGGAAGACTTTCTCATCCCAACCTTGTAAAGCTGTTGGGATTTGGGCGAGAGGAAGGTGTGTTATTCCTGGTGTATGAATTTATGCATAGGGGCAGCTTGGATAACCACCTATTTGGAAGAGGTTCAAATGTTCGACCACTTTCATGGGACACAAGACTAAAGGTTATGATTGGAGCAGCTAGGGGACTAAATTTCCTCCATTCCTTGGAGAAGAAAATTATATACAGAGATTTTAAACCCTCAAATATACTACTTGACAAGGCATATACAGTCAAGTTATCCGACTTTGGCTTAGCCAAATCTGTTCATGGTGATCATACTCACGTATCAACACAAATTGTGGGAACACATGGCTATGCTGCTCCTGAGTACCTTGCCACAGGTCATTTGTATGTGAAAAGTGATGTGTATGGATTTGGGATTGTTTTGGTGGAGATGTTGACTGGGAAGCGGATAGGTGATATAATGCGCCTTTGTCAGCAAAAGTCCTTACAGGATTGGCTCAAATCAAATCTATTAAACAGAGGGAAAATAAGGAACTGTATGGATGCAAGGTTGGAAGGCAAATATCCATCCAACTTAGCATTAAAAGTATCTCAGCTGACACTAAAATGCATCCAAACAGACCCCAAAATAAGGCCATCAATGAAAGAAGTAGTTGAAACATTGGAACAGATTGAAGCAGCAAATGAGAAACCAGCTGATAACAGAAAACGGCCTACTAAGGCCCGGGTAGTTCAACTACATGGCCAGCCTGATGGTGGCTAA 1299 0.4234 MGNCWSLQSSSPGDRPNSNTAYDPNNQSGSTQFSFGVSKRRLIQSDNSTSLGRSSHSGGTSRLFSKNYSTSNNTSTSLWGSENSQASRVRDEEGFPDGQILDAANLKVFTLAELKAATRDFRADTVLGEGGFGTVYKGSIKDGEASKRGEELTIAIKKLNSDSKQGIAEWVSEVNFLGRLSHPNLVKLLGFGREEGVLFLVYEFMHRGSLDNHLFGRGSNVRPLSWDTRLKVMIGAARGLNFLHSLEKKIIYRDFKPSNILLDKAYTVKLSDFGLAKSVHGDHTHVSTQIVGTHGYAAPEYLATGHLYVKSDVYGFGIVLVEMLTGKRIGDIMRLCQQKSLQDWLKSNLLNRGKIRNCMDARLEGKYPSNLALKVSQLTLKCIQTDPKIRPSMKEVVETLEQIEAANEKPADNRKRPTKARVVQLHGQPDGG. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00728 432 Gene3D Transferase(Phosphotransferase) domain 1 205 426 - -
Seca11g00728 432 MobiDBLite consensus disorder prediction 1 93 - -
Seca11g00728 432 FunFam Serine/threonine-protein kinase BIK1 88 204 - -
Seca11g00728 432 ProSitePatterns Protein kinases ATP-binding region signature. 127 158 IPR017441 GO:0005524
Seca11g00728 432 MobiDBLite consensus disorder prediction 406 432 - -
Seca11g00728 432 Gene3D Phosphorylase Kinase; domain 1 105 204 - -
Seca11g00728 432 ProSiteProfiles Protein kinase domain profile. 121 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00728 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Seca11g00728 432 SUPERFAMILY Protein kinase-like (PK-like) 106 405 IPR011009 -
Seca11g00728 432 Pfam Protein kinase domain 123 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00728 432 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 205 414 - -
Seca11g00728 432 PANTHER OS01G0588500 PROTEIN-RELATED 70 404 - -
Seca11g00728 432 MobiDBLite consensus disorder prediction 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00728 Seca-Chr11 7218599 7222229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00728 98 419 Receptor kinase-like Gene Family AT4G02010 41.390 3.22e-78 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca11g00728 Pkinase 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00728 - - gmx:100813304 683.33