Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00723 ATGGAAGATGATGCAGAATGCATGACAGGGCTATGTCTGGGGCTGGGAATGGGAGGGCATGTTCCAAAAAAGGAGAAGCAGAAAGTGAACAAGCCTCTGCCATGCCTTGACCTTGCCTTTGAGCTTTGTCCAAAAAAGGAAGTAAATCATCATAGCCCCAATGCAAAGAGCACTGATTCTGATAACTGCAGAAAGAAATTGAGGCTTACAAAGGAGCAATCAGACATGCTTGAAAACAGCTTCAAGCTCCATACCACTCTTAATCCTATCCAGAAACAAACACTAGCTGAACAATTGAATTTAAAGACAAGACAAATTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAGTTGAAGCAAACAGAGGTGGATTATGAGTTGTTGAAAAAACACTGTCAAAATCTAAGCGATGAGAACAAAAGGTTGAAGAAGGAATTGCAGGAATTGCGTGCACTGAAGCTTGGACCATCGCCTTTATGCATTCAGCTATCAAAAGCAGCCACTCTGAGTGTGTGTTCTTCGTGTGAGAAACTGTTAAAGATGAATGAAGGGAAGAACAACGTTGCCATCTCAGACACAAAACTCAGAAATTAG 597 0.4154 MEDDAECMTGLCLGLGMGGHVPKKEKQKVNKPLPCLDLAFELCPKKEVNHHSPNAKSTDSDNCRKKLRLTKEQSDMLENSFKLHTTLNPIQKQTLAEQLNLKTRQIEVWFQNRRARTKLKQTEVDYELLKKHCQNLSDENKRLKKELQELRALKLGPSPLCIQLSKAATLSVCSSCEKLLKMNEGKNNVAISDTKLRN. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00723 198 Gene3D - 55 125 - -
Seca11g00723 198 CDD homeodomain 64 121 IPR001356 GO:0003677
Seca11g00723 198 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Seca11g00723 198 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Seca11g00723 198 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 45 184 - -
Seca11g00723 198 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Seca11g00723 198 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Seca11g00723 198 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Seca11g00723 198 Coils Coil 112 153 - -
Seca11g00723 198 SMART HOX_1 62 124 IPR001356 GO:0003677
Seca11g00723 198 SUPERFAMILY Homeodomain-like 53 121 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00723 Seca-Chr11 7183466 7184985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00723 62 193 Homeobox Transcription Factor Family AT4G37790 62.121 2.30e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca11g00723 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00723 - K09338 gmx:100812222 276.559