Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00720 ATGAAAATGACAGTCCCAAATGTTCAAGAGTCAGGGTTCATGGAATTCATTAGTGGAAACCTTCGGACAATTAGCTACTTTGACTTCCAGACATTGAAGAAGGCCACCAAGAATTTCCACCGAGGAAATTTTCTTGGAAGTGGTGGATTTGGACCTGTCTATCAGGGAAAATTGGCAGATGGAAGGCTGATTGCTGTTAAGAAATTGTCCCTTGACAAATCCCAACAAGGAGAAAGAGAATTTCTAGCAGAAGTGAGAATGATCACAAGCATCCAACACAAAAATCTGGTTCGCCTTTTGGGATGTTGCACAGATGGGCCTCAAAGGATACTTGTGTATGAATACATGAAGAACAGAAGTTTGGACCTTTTCATATATGGAAACAGTGATGAATTTCTGAATTGGAGGACTAGATTCCACATTATTCTAGGAGTAGCGCGGGGATTGCAATACCTGCATGAGGATTCACATCTAAGAATTGTTCATCGAGATATCAAAGCAAGCAACATTCTCCTTGATGAAAAGTTTCGGCCAAGGATTGGAGACTTTGGGCTAGCTAGGTTCTTCCCTGAAGACCAAGCTTACCTTAGCACTCAGTTTGCTGGAACATTAGGTTATACTGCTCCTGAATATGCTATTAGAGGAGAACTGTCCGAAAAGGCAGACATCTATAGTTTTGGAGTTCTTGTGCTTGAAATCATAAGTTGCAGGAAAAACACAGATCTCACATTACCATCAGAAATGCAGTACCTCCCTGAATATGCATGGAAACTTTATGAGAAGTCAATGGTGATGGATCTTGTAGATCCAAAGCTGAGAGAAGATGGATTTGTAGAAAAGGATGTGATGCAGGCATTCCATGTGGCTTTCTTATGCCTTCAGCCTCTTGCGGATATGAGACCTGCCATGTCAGAGATAGTAGCATTGTTGACATTCAGAATTGAAATGGTTACAACACCAATGAGGCCAGCCTTCCTTGAGAGAAGGCGCAAAATGGATGATGAGAACCACTCTTGGGAAGCCATATCCAAGTCTTAA 1038 0.4171 MKMTVPNVQESGFMEFISGNLRTISYFDFQTLKKATKNFHRGNFLGSGGFGPVYQGKLADGRLIAVKKLSLDKSQQGEREFLAEVRMITSIQHKNLVRLLGCCTDGPQRILVYEYMKNRSLDLFIYGNSDEFLNWRTRFHIILGVARGLQYLHEDSHLRIVHRDIKASNILLDEKFRPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRKNTDLTLPSEMQYLPEYAWKLYEKSMVMDLVDPKLREDGFVEKDVMQAFHVAFLCLQPLADMRPAMSEIVALLTFRIEMVTTPMRPAFLERRRKMDDENHSWEAISKS. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00720 345 SMART serkin_6 39 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00720 345 Gene3D Transferase(Phosphotransferase) domain 1 116 319 - -
Seca11g00720 345 SUPERFAMILY Protein kinase-like (PK-like) 21 313 IPR011009 -
Seca11g00720 345 CDD STKc_IRAK 45 311 - -
Seca11g00720 345 ProSiteProfiles Protein kinase domain profile. 39 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00720 345 FunFam Cysteine-rich receptor-like protein kinase 10 4 115 - -
Seca11g00720 345 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 23 336 - -
Seca11g00720 345 Gene3D Phosphorylase Kinase; domain 1 13 115 - -
Seca11g00720 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Seca11g00720 345 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 116 320 - -
Seca11g00720 345 Pfam Protein tyrosine and serine/threonine kinase 42 308 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00720 Seca-Chr11 7159377 7162417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00720 27 326 Receptor kinase-like Gene Family AT1G56120 48.333 5.53e-98 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca11g00720 PK_Tyr_Ser-Thr 5.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00720 - - ccaj:109792436 616.305