Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00713 ATGATACCAGCTTATCGCCGTTCAGTATCTTCTCTCATGCCTCTGGATCTTAATCAAGACCAAAACCATGAACTACTTTTCAGTCCTAACCATCACTCCTCTTCTTCTTCTTCATCATTTTCTTCTCTATCCTATCCTATTCTCTTCAACTCTCCAGATCAAAATCAAGAAGGATCTCACTACTGTGAACCAAAGCAGTTACCAAATATTCATGAAGAGGCTGAGAAGACTATTCCTTGTAGCGGATCATGTGCAGAAACAGAAAAGCAGTGCGAGAGCAGGAAGGTGAGAGTTTGGAAGAAAGAAGAAAATCATGAAGCAACGACCGAGGATGGTTCACTGAAGTGGATGTCTTCAAAGATGAGAATGATGCGGAAGATGATGGTTTCGGATCAAGGCAACTCTATGCAGCAGAATGATCAAGACAATAGCAGCAGCAGCAACAATTATTATTCAAACAACACTACAGTTAGGGTTTGTGCTGATTGCCACACCACCAAGACCCCTCTCTGGAGAAGTGGACCAAGAGGCCCCAAGTCACTTTGCAACGCGTGTGGAATACGACAAAGGAAGGCGAGACGTGCCATGGCTGCTGCAGCATCGGCGAATGGTACAATTCTGATGGCAACTGAGACATCCGTGAAGCGAAACAAGTTGCAGAAGAAAGAGAAGAAGAACAAGTCCAAAATTGAGTCACCACAACACATGAAAAAGAAGCACAACCTTGAAGCCAAGGCCAAGCCATCAAAAAGTAAAAAGAAATTCGGTTTTGAGGATTTGACATTAAGGTTAAGCAAGAACTTGGCTCTTCAGAAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCGATCCTTCTCATGGCTTTATCTTACGGCCTAGTTCATGGATGA 888 0.4369 MIPAYRRSVSSLMPLDLNQDQNHELLFSPNHHSSSSSSSFSSLSYPILFNSPDQNQEGSHYCEPKQLPNIHEEAEKTIPCSGSCAETEKQCESRKVRVWKKEENHEATTEDGSLKWMSSKMRMMRKMMVSDQGNSMQQNDQDNSSSSNNYYSNNTTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAASANGTILMATETSVKRNKLQKKEKKNKSKIESPQHMKKKHNLEAKAKPSKSKKKFGFEDLTLRLSKNLALQKVFPQDEKEAAILLMALSYGLVHG. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00713 295 Gene3D - 158 196 IPR013088 GO:0006355|GO:0008270
Seca11g00713 295 MobiDBLite consensus disorder prediction 224 239 - -
Seca11g00713 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 153 194 - -
Seca11g00713 295 ProSitePatterns GATA-type zinc finger domain. 160 185 IPR000679 GO:0006355|GO:0043565
Seca11g00713 295 CDD ZnF_GATA 159 187 IPR000679 GO:0006355|GO:0043565
Seca11g00713 295 SMART GATA_3 154 206 IPR000679 GO:0006355|GO:0043565
Seca11g00713 295 MobiDBLite consensus disorder prediction 131 150 - -
Seca11g00713 295 FunFam GATA transcription factor 21 154 254 - -
Seca11g00713 295 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 295 - -
Seca11g00713 295 MobiDBLite consensus disorder prediction 215 250 - -
Seca11g00713 295 ProSiteProfiles GATA-type zinc finger domain profile. 154 190 IPR000679 GO:0006355|GO:0043565
Seca11g00713 295 Pfam GATA zinc finger 160 193 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00713 Seca-Chr11 7096354 7097516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00713 92 295 C2C2-Gata Transcription Factor Family AT4G26150 43.697 4.63e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca11g00713 GATA 3.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00713 - - gmx:100810090 280.026