Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00708 ATGCACAAGTTTCTTCTCCCTCTGTGTGTGTGTTTCACTTTCATTAGTTGGTTTTTATTATGTACATATTTTTGGACTTTCTGGAGAGTGGGTAGCCGCAGGGGAGGGGGGATGGGATGGTGGAGAGGACCTAATCTGAAATTTATTCATGCAATTTCTCCAACACCTGCATCCACCATGTCTTCGACTGAGATTGCCATGAAAACCACAAATACCACCTTATCACCATACACATTTGTGGAGAAAAGAACTTCTCCAAAGGATACCACAAAGAGATCTAATGATGGTATTTCTGATTCTCAATATTGGAGATATGATGTTTCTCAAAAACGACATAAACATGAAGCTGGAGATAGTGATAAGGTGTGTTTCAAATTTGTATCTTCCGGTTCTTGTCCACGAGGAGAGAAGTGCAATTTTCGACATGATATGGATGCAAGGGAGCAATATATGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAAGGTGATAGGCATCCTTCTAGGAGGCCTGGATCTGAAACTAGGTCTAGCAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCGCATTTAATCATAAGCATTGGGGAAAATTACTATTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTGCTGATAATACCAGTTGAGCATATGCCAAGTACCTTATCCATGTCTTCTGAATCTGAACTTGAGATCTTAAAGTTTCAGAATAGTCTCAAGAGGTACTGCAAGAATCAAGAAAAGGAAGTCATCTTTTTTGAGTGGATTTCCATACGTAGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAGTAATGGTTGAAAAAGTATTCAATTTAGCTGCACAAAAGTTGGGATTTAAATTTGTGGCAAAGAAATTTGATAACATTTCTGATGGAAGAAAGTTTTTGAAGACACAAATTGATGGGAATTCAAGCTTGTTCTATGCTGAAATCCCAGGAGGCACAATTCTACTGCATCATGTTGAGGAGAAAGAGAGATTTCCTGCCCAATTTGGACGTGAGGTTCTGGCAGGGTTGCTTAATATGGCAGATAATGCAGATTGGAGGAATCGTGAACATAGCAAAGATGAAGAGATGAAAATCGTTGAAGATTTCAAGAGCCGATTTGAAGAATATGATCCAAACTGTTGA 1242 0.3977 MHKFLLPLCVCFTFISWFLLCTYFWTFWRVGSRRGGGMGWWRGPNLKFIHAISPTPASTMSSTEIAMKTTNTTLSPYTFVEKRTSPKDTTKRSNDGISDSQYWRYDVSQKRHKHEAGDSDKVCFKFVSSGSCPRGEKCNFRHDMDAREQYMRGVCFDFLNKGKCERGPDCNFKHSLQDEGDRHPSRRPGSETRSSRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPSTLSMSSESELEILKFQNSLKRYCKNQEKEVIFFEWISIRSTHANLQAIPIPSSKAVMVEKVFNLAAQKLGFKFVAKKFDNISDGRKFLKTQIDGNSSLFYAEIPGGTILLHHVEEKERFPAQFGREVLAGLLNMADNADWRNREHSKDEEMKIVEDFKSRFEEYDPNC. 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00708 413 Pfam Protein similar to CwfJ C-terminus 2 321 410 IPR006767 -
Seca11g00708 413 SUPERFAMILY CCCH zinc finger 121 147 IPR036855 GO:0046872
Seca11g00708 413 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 47 412 IPR040194 -
Seca11g00708 413 Gene3D - 106 177 - -
Seca11g00708 413 SMART c3hfinal6 151 176 IPR000571 GO:0046872
Seca11g00708 413 SMART c3hfinal6 119 144 IPR000571 GO:0046872
Seca11g00708 413 SUPERFAMILY CCCH zinc finger 151 178 IPR036855 GO:0046872
Seca11g00708 413 SUPERFAMILY HIT-like 198 271 IPR036265 -
Seca11g00708 413 ProSiteProfiles Zinc finger C3H1-type profile. 117 145 IPR000571 GO:0046872
Seca11g00708 413 ProSiteProfiles Zinc finger C3H1-type profile. 149 177 IPR000571 GO:0046872
Seca11g00708 413 Gene3D - 194 315 IPR036265 -
Seca11g00708 413 Pfam Protein similar to CwfJ C-terminus 1 193 307 IPR006768 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00708 Seca-Chr11 7042112 7045455 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca11g00708 CwfJ_C_1 7e-38 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00708 K24939 - gmx:100782106 666.381