Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00700 ATGGATGGCGTCTTCTCCCTCCCACAAGCCGCCAGAACTGATTTTCTCCGCTCTCTATTGCAATCTTTTGGCTGTGCTTACATTTCTTTGTGGCGATATGATTCCAATTTATCCAATCGTTTGTTCTTCTTGGATGGATTGTACAATGCAACAACCAACCAACCTAGCTCTTCTATGGGGAGTAAGAGTAGTGTAGCTGAAAGGCTTTTTAACCAATATCAGGGTTTAACATTTGATGTCAATGATGACTGTGTTCCTGGACTAGCTTTCAGGAACCACCTTCCTTACCTGGAGATGCAACAACTGGATCTTCTAAGACTAACATCCACGCAAATACAATCTCAATTTTTTCAAGAAGCAAGGATTAAGAGTGCTATTTTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGCTTCTCCAATATTATATCTCAAGGTGACATTCAGACAATACTTGGGAATTTATTTCCAGGAGTTCTCTCTTTACATTCCCAATATAATTCAATTGATGATCAGATTAATATTGGACCTTCATCATCTAATTCATCTTCTTACAAATCATTATCTAGCCCTTCCCACTCCCACTTTCCTGAAACTGAAACCCTTCCCACCACACAGAGTAATTATACTATGATCCCTTATTATTACCAACAAACCATCCAAACATTATTATCCCCATCAGCTCAAGTCAATATTCCAAGACAATTCTCACCTGAGAGTGAACATGATGCAATTGTGAGAGCAATCCTCCATGTTATATCTTCAACTTCTCCCCAACAAAATATGCCTAATCCATTAATGTTGCATTCAGAAGCTACTGCTTTCAAGAGATATAGACCTCAAGATAGAAGCACAAACATAACATCTACTTCTAAAATGGGATCCCAAAGGCAAAGCATGGTGAATAGGTCAATTGCACTCTTGAGAGGCTTAAATTCAATGAGAGTGAGAGAACGCATTCAAGCAACCACACGTCCCAATAGTATCCAACTACATCATATGATATCAGAGCGAAGAAGGCGTGAAAAACTCAATGACAATTTTCAGGCACTCAGAGCACTACTTCCTCCGGGAACTAAGAGAGACAAAGCGTCGATCCTTACAACAGCAAAGAAGACAATGAGCTCCTTGATAGCTGAAATTGAAGAGCTTCAATTGAAAAATCACAAGTTGGTGGCACTTTTGTCAGCCAAAGAATTAGAAGAAAACAAAGCAATAAGAAGCTCCTCATCAAATGAAAGGTTGAACGTTGAGGCGGTTTCAAATGTAAATGTAAATGTAGTGGAGGCAGTGAGCTCATCATCAGAAGAGCGAATGGTGGAGTTGCAAGTGAGTGTGAGAGGAGAATTAAGTTCTCATTCTCAAGCTGATATTTTGATTCGCTTATTGGAATTCTTGAAAGGGGTTCAGAATATTGTGAGCTTAATTTCCATGGACGCAAACACACATATTACACAAGGGACACTCATCAATCAATTAACCTTCAGGCTTAGGAGTATTGAGGGAAGTGAATGGGACGAGTCTGCCTTCCGGGAAGCAGTCAGGAGAGTTGTTGCTGACCTGCTCCGTAACTTAAACCAATAG 1584 0.4015 MDGVFSLPQAARTDFLRSLLQSFGCAYISLWRYDSNLSNRLFFLDGLYNATTNQPSSSMGSKSSVAERLFNQYQGLTFDVNDDCVPGLAFRNHLPYLEMQQLDLLRLTSTQIQSQFFQEARIKSAIFMGCNKGEIELGFSNIISQGDIQTILGNLFPGVLSLHSQYNSIDDQINIGPSSSNSSSYKSLSSPSHSHFPETETLPTTQSNYTMIPYYYQQTIQTLLSPSAQVNIPRQFSPESEHDAIVRAILHVISSTSPQQNMPNPLMLHSEATAFKRYRPQDRSTNITSTSKMGSQRQSMVNRSIALLRGLNSMRVRERIQATTRPNSIQLHHMISERRRREKLNDNFQALRALLPPGTKRDKASILTTAKKTMSSLIAEIEELQLKNHKLVALLSAKELEENKAIRSSSSNERLNVEAVSNVNVNVVEAVSSSSEERMVELQVSVRGELSSHSQADILIRLLEFLKGVQNIVSLISMDANTHITQGTLINQLTFRLRSIEGSEWDESAFREAVRRVVADLLRNLNQ. 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00700 527 Gene3D - 330 406 IPR036638 GO:0046983
Seca11g00700 527 Pfam Helix-loop-helix DNA-binding domain 332 377 IPR011598 GO:0046983
Seca11g00700 527 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 109 520 IPR044658 -
Seca11g00700 527 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983
Seca11g00700 527 CDD bHLH_AtbHLH_like 333 385 IPR045239 -
Seca11g00700 527 SMART finulus 334 383 IPR011598 GO:0046983
Seca11g00700 527 MobiDBLite consensus disorder prediction 178 202 - -
Seca11g00700 527 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 392 IPR036638 GO:0046983
Seca11g00700 527 Coils Coil 367 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00700 Seca-Chr11 6942697 6947073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00700 1 521 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 35.587 4.74e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g00700 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00700 - - gmx:100807098 485.723