Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00697 ATGAGTGTGTGGTCAGATGAACGTGAAGATGAAGAAGAAGAAGAAGAGCGGGACAGTAATGGTTCAGAAGAAGAAGATGATGACTATGATGAAGATGGAGATGAAGACTATGTTGATGATGAAGATGAAGATTGGGACCATTCACCAGTGTATGATGATGATGACCATAATGAAGAGGACGAAGATGATGAAGACAGAGATGAAGAGAGTGAGGTTGCAGTTGAAGGTATTAGTATAAATGATGTGGATGATATCCGTAAGATAGATTTGGTAAATATTAGTTGGGAGGAGGTGGGCAGGTGTGTATTTTCTGACTTGGATGTTGCATATCAATTCTACTGTAAATATGCAAGAAGAAAGGGTTTTGCTGTCCGAAAAGGAAAGGTGGTAAAGAATAGTAAAGGGGAAATTGTACAGCAAACACTATTTTGCAACATGGAAGGGGAAAGAATAAGCTCAGGTCCAAAAAAGCGCGAAGCAAAACCAGAAACTAGATGTGAATGCCTTACAATGTTTTGTGTTCGAAAAGAGTTATTGAGTGGGGGATGGTATGTGAAAATCTTCAATGATGATCACAATCATGACATGCTTGAAAACAAGTATTGTGGGATGATGACAGCTCACCGGAAAATGACCGAGTCTGACACAATGGAAATGAACAGTATGAGAAGTGTTGGGATATCTGTTCCTGATATATATGCCTCTTTTGCTAGTCGGTCTGGAGGCTATGACAAGGTTGGGTTCCGCAAAAAGGATATGTACAATCAAATTGACAAACAACGACGGTTTCAAAGGTCTGATGCAAAAACTGTGCTAAGGTACCTACGTGAAATGCGAAAGCATGACCCAAATTTTGTTGTCCATTGTAAGCAGTCAACCATGTGGATGATTTACACAGTTAAGAGGTACCAAAGTGGTGGCAAAGAATGGTATGTGTCACTCTATCCACCTTCAAATGATTTCAAATGTTGTTGCCAGCGAATGGAATCGTATGGGTTGTCGTGCCCACACATCATATCTGTGTTGGTTTACCTTGACTATGCAGAGATTCCTCCATGTCTAATACTTCAAAGGTGGACGAAACGTGCTAAAGAATCTATCCGCCACATACTGATTGCAAGCACTCACTATTGGGACTCATCCTTGATTGCTCGATATTCTTCACTGCTAGAGCAATGCAGACAAATGTGTAACCTGGCTGCACGGTGTGATGAAGATTTTAACCGTATTAAAGAGTGGATAAATTCTGAAATCCAAAGGTTGAAAGATAAATATGGGGATAGGATTTTTGAGCAAGATGCAGATTTGGATGGGCTGGATAGTGGTGTGCTTGATCCTGTTCGCGTTAGAACAAAAGGTTGCCCTAGAGCCTCAAGTAGTGTTCCTAGTAAAGGTAGGCGAAAGAACAAGTGTAGCAGGTGTGGCAGATTGGGTCATAATAAAAAATGTTGTCCTCAAACTCGCATGTTACAACCTGCTGCCACCCCTTGTGGGATGGGTGGTCAAGAGGTGGGAAGTCAAAGTACATTTGATCTATATGTGGACTTGGTTAGTAGTTTTTAA 1563 0.4101 MSVWSDEREDEEEEEERDSNGSEEEDDDYDEDGDEDYVDDEDEDWDHSPVYDDDDHNEEDEDDEDRDEESEVAVEGISINDVDDIRKIDLVNISWEEVGRCVFSDLDVAYQFYCKYARRKGFAVRKGKVVKNSKGEIVQQTLFCNMEGERISSGPKKREAKPETRCECLTMFCVRKELLSGGWYVKIFNDDHNHDMLENKYCGMMTAHRKMTESDTMEMNSMRSVGISVPDIYASFASRSGGYDKVGFRKKDMYNQIDKQRRFQRSDAKTVLRYLREMRKHDPNFVVHCKQSTMWMIYTVKRYQSGGKEWYVSLYPPSNDFKCCCQRMESYGLSCPHIISVLVYLDYAEIPPCLILQRWTKRAKESIRHILIASTHYWDSSLIARYSSLLEQCRQMCNLAARCDEDFNRIKEWINSEIQRLKDKYGDRIFEQDADLDGLDSGVLDPVRVRTKGCPRASSSVPSKGRRKNKCSRCGRLGHNKKCCPQTRMLQPAATPCGMGGQEVGSQSTFDLYVDLVSSF. 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00697 520 ProSiteProfiles Zinc finger CCHC-type profile. 470 486 IPR001878 GO:0003676|GO:0008270
Seca11g00697 520 MobiDBLite consensus disorder prediction 1 71 - -
Seca11g00697 520 Pfam FAR1 DNA-binding domain 111 197 IPR004330 -
Seca11g00697 520 ProSiteProfiles Zinc finger SWIM-type profile. 298 346 IPR007527 GO:0008270
Seca11g00697 520 MobiDBLite consensus disorder prediction 1 73 - -
Seca11g00697 520 PANTHER OS01G0519700 PROTEIN 102 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00697 Seca-Chr11 6922291 6924729 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g00697 FAR1 7.7e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00697 - - tpra:123886745 205.297