Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00694 ATGGCGGTTGCTCACGGTGGCTGTAGCGGTTGTTGTCCACTCTCATCGTCGACGCCTATTCACGAGGCACTACTGAATAGTAGAACTCGTGCCATGGAAGATGAACAAGTAGCCAGAGTCAAAGCAGAGTTATTGGATGACAGCGCTGGTTCCAACGACGACGTTTTGAGCGAAAGGAAGGACTCCGAAGTGACTGAAGAAGAGGGCGCTGCAGACTTACCTCTTCATATCAAAGAAGAGGTTGCCGACGCTGGCGTTACAGGTCCGTCGATTGAGTTGCCAAAACCAATGGAAGGGTTGCACGAGGTGGGCCCACCACCTTTCCTCAAGAAAACCTTTGAAATGGTGGAGGATCCGGAAACCGACCCGATTGTGTCATGGAGCCCTACTCGTGACAGTTTCATCGTTTGGGATTCTCACGAATTCTCCAAAATCCTTCTCCCTAAATACTTCAAGCACAGCAATTTCTCTAGCTTCATTCGCCAACTCAACACCTATGGCTTTAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCAAATGAAGGATTCCAAGGAGGGAAGAAGCACTTGCTGAAGAACATAAGGAGGAGAAGTAAGTATAACAAACTGCATCAAGGGACATTCAATTTGATGAAGCCTGGCCTAGAGGCTGAAGTGGAGAAACTGAAGAAGGACCAGAACATATTGAAAGTGGAAATTCTGAAGCTGAGGCAGCAGCAGGAGAATTCACATATTCAGCTCACAAATGTTCAGGAGCGAATTCGGTGTGCAGAGTTGAAGCAGTATCAGATGATATTTTTCCTCACCAGAATGGCTAGAAGGCCTTCGTTTGTTGAGCAGTTAATCCAAAAGGTTAAGCGAAGAAGAGAGCTTGATGGTGCTGACATGGTTAAGAGGCCTAGATTGCTTGGAACTCAGTGCCCTGTAACATTCCCTAAGAAGGCTCTGGAGACAATTCCTAATGTTGATTATGGTTATAGACACCAAGGTCGTGAACAATTCGCTACATTGCAATCCGAGCTGAATGGACTCATGTCTGAAACTGTGAACACTAGCAAGATGGAACCCCCAGCTCCCTCTCCTTTGGAAAATGAATTATGCAGCTCTGTACAGGGATTAAGGGCCTATGGTTCTAGAGCAAGTGGGCAAGATGTTTCTTCTGCTTATCATGTTATGTCAGAAAAACTACTGGGGGAAAATTCTGGTGTGGATGAAGAACTAGATGTGAACGACTCGAATATCTATCTTGAATTAGAGGATTTGATAAGTAAGCCAGCAGATTGGGTTGGATCTGCAAGTGGATTAGTGGGACAAACTAGTTGA 1323 0.458 MAVAHGGCSGCCPLSSSTPIHEALLNSRTRAMEDEQVARVKAELLDDSAGSNDDVLSERKDSEVTEEEGAADLPLHIKEEVADAGVTGPSIELPKPMEGLHEVGPPPFLKKTFEMVEDPETDPIVSWSPTRDSFIVWDSHEFSKILLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQGTFNLMKPGLEAEVEKLKKDQNILKVEILKLRQQQENSHIQLTNVQERIRCAELKQYQMIFFLTRMARRPSFVEQLIQKVKRRRELDGADMVKRPRLLGTQCPVTFPKKALETIPNVDYGYRHQGREQFATLQSELNGLMSETVNTSKMEPPAPSPLENELCSSVQGLRAYGSRASGQDVSSAYHVMSEKLLGENSGVDEELDVNDSNIYLELEDLISKPADWVGSASGLVGQTS. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00694 440 SMART hsfneu3 104 197 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g00694 440 ProSitePatterns HSF-type DNA-binding domain signature. 147 171 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g00694 440 MobiDBLite consensus disorder prediction 43 69 - -
Seca11g00694 440 PRINTS Heat shock factor (HSF) domain signature 159 171 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g00694 440 PRINTS Heat shock factor (HSF) domain signature 146 158 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g00694 440 PRINTS Heat shock factor (HSF) domain signature 108 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g00694 440 FunFam Heat shock transcription factor 1 101 198 - -
Seca11g00694 440 Pfam HSF-type DNA-binding 108 197 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g00694 440 SUPERFAMILY "Winged helix" DNA-binding domain 104 197 IPR036390 -
Seca11g00694 440 Coils Coil 219 239 - -
Seca11g00694 440 Gene3D - 101 198 IPR036388 -
Seca11g00694 440 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 94 327 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00694 Seca-Chr11 6865152 6867142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00694 94 305 HSF AT2G26150 54.338 1.26e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca11g00694 HSF_DNA-bind 9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00694 K09419 - gmx:100818430 622.854