Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00685 ATGTCCGGTGACGCCACGAACTGGGATGAAGATGCGTACAGGGAAAGCATACTGAAGGAGCGGGAGATTCAAACGCAAACCGTTTTCCGAACCGCCTGGGCTCCCTCTCAAAGCCCTAACCTCGATTCTCTCATCGTTGCCTCCAGCGACGGTTCCATCGCCTCCTACTCTATCTCTTCCGCCATCTCTGCCTATAAGCTCAATAATCCCTTTGGTTTTACCAATACCAACTCAGATAAGTTATTGGCTGAACCAAGTTGCTTCATTCAAGCACATGATGGACCTGCATATGATGTCAAATTCTATGGTGATGGTGAAGATGCTCTGTTGCTGAGTTGTGGTGATGATGGTCGGATTCGAGGATGGAAGTGGAAGGATCTTACAACCTCAAAGTATTGTGTTTCTTCGCAAGGAAATGATATCAAGCCTATACTTGATGTGGTGAATCCTCAACACAATTCTCTGATTGTCCTCTATATACCCACACTGTTGTCTTTCAGAGGTCCTTGGGGTGCGCTTTCACCTGTCCCTGAGAATAATGCTATTGCTGTTAATACTCAGGGGGGATCTGTTTTTGCTGCTTCTGGTGATTCCTGTGCATATTGTTGGGATGTGGAAACTGGGAAAGTAAAAATGGTGTTCAAGGGGCACTTGGACTACTTGCATTGTATAGTTGCTCGCAACTCATCAGATCAGATCATAACAGGTTCAGAGGATGGGACCGCACGAATTTGGGATTGCAAAAGTGGAAAGTGTATCCAAACGATTAATCCAACAAAACATTTGAAGTTAAAAGGATCTGTTTCATGGGTTGGCTGCATTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGGAATATATCGCTTTGGAACCTTCCTGCTTCAGAGTGCATATCAAAGATTTCAACTTGTGGTTCTGTACAGGACATGTTATTTGACAATAATCAAATTTTGACAGTTGGTGCCGACCCTCTACTCAATCGCTTTGACATGAATGGAGCGATCCTTTCACAAATACAGTGTGCTCCTCCATCAGCTTTTTCTATCTCCTTACATCCAGCAGGGGTTATGGCGGTTGGAGGTTATGGATGTCTTGTGGATGTTATCTCACAATTTGGCAGTCACATGTGCACATTTCATTGCCAATGTGTTCAGCGACAGCGAAGTTCATAG 1185 0.4473 MSGDATNWDEDAYRESILKEREIQTQTVFRTAWAPSQSPNLDSLIVASSDGSIASYSISSAISAYKLNNPFGFTNTNSDKLLAEPSCFIQAHDGPAYDVKFYGDGEDALLLSCGDDGRIRGWKWKDLTTSKYCVSSQGNDIKPILDVVNPQHNSLIVLYIPTLLSFRGPWGALSPVPENNAIAVNTQGGSVFAASGDSCAYCWDVETGKVKMVFKGHLDYLHCIVARNSSDQIITGSEDGTARIWDCKSGKCIQTINPTKHLKLKGSVSWVGCIALDASESWLACSSGRNISLWNLPASECISKISTCGSVQDMLFDNNQILTVGADPLLNRFDMNGAILSQIQCAPPSAFSISLHPAGVMAVGGYGCLVDVISQFGSHMCTFHCQCVQRQRSS. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00685 394 Pfam WD domain, G-beta repeat 210 246 IPR001680 GO:0005515
Seca11g00685 394 Pfam WD domain, G-beta repeat 259 295 IPR001680 GO:0005515
Seca11g00685 394 SMART WD40_4 298 334 IPR001680 GO:0005515
Seca11g00685 394 SMART WD40_4 207 246 IPR001680 GO:0005515
Seca11g00685 394 SMART WD40_4 14 57 IPR001680 GO:0005515
Seca11g00685 394 SMART WD40_4 257 295 IPR001680 GO:0005515
Seca11g00685 394 SMART WD40_4 82 123 IPR001680 GO:0005515
Seca11g00685 394 SMART WD40_4 166 204 IPR001680 GO:0005515
Seca11g00685 394 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 1 387 IPR042626 -
Seca11g00685 394 Gene3D - 162 392 IPR015943 GO:0005515
Seca11g00685 394 SUPERFAMILY WD40 repeat-like 33 375 IPR036322 GO:0005515
Seca11g00685 394 Gene3D - 8 148 IPR015943 GO:0005515
Seca11g00685 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 246 - -
Seca11g00685 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 255 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00685 Seca-Chr11 6781921 6789072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00685 182 260 Eukaryotic Initiation Factors Gene Family AT2G46280 31.707 7.01e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00685 - - gmx:100806423 662.529