Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00683 ATGTCCACACCGAGATCGGTTGCTGTTGCCGTCAGTGGCGGCTCCGGCGCCGCCAAGGGTAGCCGGAGAGCCGTCCAGTGGGCGGTGGATAATCTCGTTCCTCAAGCAGATAGGTTCATCTTAGTTCACGTCATCCCCACAATCACTTCAATTGCAACCCCAACTGGAGAGCATATTCCCATTTCGGAAGCAGATGCTGATGCCTTTGCAGCTTATGTGGAGGATGTGAAACAAAAGTCTGAACAAATCTTTGTTTCATTCAAGAAGCTCTATGAATCAGACATGATGGAAACCTTGCTACTGGAAGATGACAATCCTGCAAATGCACTTCTTAGCTTTGTCTCTGAATCTGGGATCCAAATTTTAGTGCTGGGTTCTGACTCCTCAAATTTTATTACGAGGAAGCTAAAAGGACCTGGAATACCAACTACCATTCTAAGATGTGCTCCTGACAGCTGTGATGTATATGTTGTATCTAGAGACAAAATCATATCAAAGTTAGCTGATTCTTCATCTTCATATTCTCATGAAACTAGCCCAAGGTACTTCATGTCTGCTCAAGTAAATAAAGCAGACAATAGTGCTGGCATTGGTGGAGAAATGTCTGGAATTAATTCATCCCCATCAGAACCTAAAATTCTAAAAACTTTCAGATTTTTGTCAATATCAGAGCGTAGTTACGTTGGTCTGCAAACAACTGGTCGTAGGGATTCTTTTGAACATTATACCAAAAATGAAGAAGAAAATCCAGAAAACATTGGAGATGATGTTGAAGCTTTTAGCCTCCACTCATTTGATTCCGTTTCTTCTGCACAACGTGAACAGTTAGTCATGCAAGAAGAAATGGAACGGCTGCAGGTGGAGTTGCAGAATACTATTGCCATGTATAAACAGGTTTGTGAAGACTTGGTTCATGTTCAAAGCAAGATCTTTTTACATGCCTGCCTTCACTTTCAGGCCGTTTTACTTTCTTCTGAGTCTCTTGAAGAAGCTCAAAGAATAAATGATTCCCTGAAAAGAGAAGAGACTTTGAGAAAGATTGCTGCTGAAGAGAAAGCAAAGTATTTAAAAGTCGCAAAGGAACTTGAGGAGGCAAAAAATATGCTTGCCAAAGAATCATACGAAAGACAGATTGCTGAACTTAATGTCCTTAAAGAATCCATTGAAAGACAGAGAATTGTTGATACATTGCTCCCAAATGACAGGAGATACAGAAAATACACCATGGATGAACTCAAGACTGCGACAAACAACTTTTCTGAGAAATTGAGAATTGGTGAGGGAGGGTATGGGAAAGTTTACAAGTGCAATCTTGATCACACATCAGTAGCTGTGAAGGTTTTGCATCACGACTCAATCAACAAAAAAGAGGAGTTTCTGAAAGAGGTTGAGATTCTTAGTCAGCTACACCATCCGAACATGGTTTTGTTACTTGGAGCCTGTCCTGATAAGGGCTGCCTTGTTTATGAATACCTGGAAAATGGAAGCCTAGAAGACTATATTCTCAAAAAAAATGGAAAACCACCACTTCCTTGGTTTGTTCGATTTCGTATAGTCTTTGAAATGGCTTGTGGACTCTCATTCTTGCATAATTGGAAGCCAGAGCCTATTGTTCACCGAGATATAAAACCTGGCAATATCTTGTTGGACAGAAATTATGTGAGCAAAATTTCAGATGTTGGACTGGCCAAACTCCTTTCAGATGTTGTGCCTGACAATATCACAGAGTACAGAGAATCAGTGCTTGCTGGTACCCTGCATTACATGGACCCAGAGTATCAAAGAACTGGCACTGTACGACCAAAATCAGATGTATATGCTTTTGGAGTTATAGCTCTCCAGTTGATAACTGCTCGCCATGCACGTGGACTCATTTTGACTGTTGAAGATGCAATTACAAATGGCTCCTTCAGTGACATTTTAGATAAATCAGCTGGAGATTGGCCATTGGATGAGACAGTGGAATTGGCTCAAATTGCCCTTAAATGTGTTGCACTTAGATGCAGAGATAGACCAGAACTTGATACTGAAGTTCTTCCACTGCTCACAAGACTTTCTGATAAGGCAAATGCTAGTGAAAGGATAGGAAGAAATAATATATGCACGCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGAGGAGCCATGTGTTGCTGCGGATGGTTTCACTTATGAGTACAGAGCAATCAAGGCATGGCTAAGCAGACACAATGTGTCACCAGTGACAAAGCTTAAACTCCCACATTCTGAGTTGACTCCAAACCATACTTTACGTTCTGCTATTCAGGAGTGGAAATCAGGAGTGACCTTTTCTCATTAG 2328 0.4119 MSTPRSVAVAVSGGSGAAKGSRRAVQWAVDNLVPQADRFILVHVIPTITSIATPTGEHIPISEADADAFAAYVEDVKQKSEQIFVSFKKLYESDMMETLLLEDDNPANALLSFVSESGIQILVLGSDSSNFITRKLKGPGIPTTILRCAPDSCDVYVVSRDKIISKLADSSSSYSHETSPRYFMSAQVNKADNSAGIGGEMSGINSSPSEPKILKTFRFLSISERSYVGLQTTGRRDSFEHYTKNEEENPENIGDDVEAFSLHSFDSVSSAQREQLVMQEEMERLQVELQNTIAMYKQVCEDLVHVQSKIFLHACLHFQAVLLSSESLEEAQRINDSLKREETLRKIAAEEKAKYLKVAKELEEAKNMLAKESYERQIAELNVLKESIERQRIVDTLLPNDRRYRKYTMDELKTATNNFSEKLRIGEGGYGKVYKCNLDHTSVAVKVLHHDSINKKEEFLKEVEILSQLHHPNMVLLLGACPDKGCLVYEYLENGSLEDYILKKNGKPPLPWFVRFRIVFEMACGLSFLHNWKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLLSDVVPDNITEYRESVLAGTLHYMDPEYQRTGTVRPKSDVYAFGVIALQLITARHARGLILTVEDAITNGSFSDILDKSAGDWPLDETVELAQIALKCVALRCRDRPELDTEVLPLLTRLSDKANASERIGRNNICTPSQYYCPILQEIMEEPCVAADGFTYEYRAIKAWLSRHNVSPVTKLKLPHSELTPNHTLRSAIQEWKSGVTFSH. 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00683 775 SUPERFAMILY Protein kinase-like (PK-like) 402 674 IPR011009 -
Seca11g00683 775 Coils Coil 345 391 - -
Seca11g00683 775 Pfam U-box domain 703 768 IPR003613 GO:0004842|GO:0016567
Seca11g00683 775 CDD STK_N 6 160 - -
Seca11g00683 775 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 5 161 - -
Seca11g00683 775 Pfam Protein tyrosine and serine/threonine kinase 424 675 IPR001245 GO:0004672|GO:0006468
Seca11g00683 775 SMART serkin_6 419 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00683 775 Coils Coil 268 288 - -
Seca11g00683 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Seca11g00683 775 Gene3D Phosphorylase Kinase; domain 1 399 491 - -
Seca11g00683 775 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 392 491 - -
Seca11g00683 775 Gene3D Transferase(Phosphotransferase) domain 1 492 702 - -
Seca11g00683 775 ProSitePatterns Protein kinases ATP-binding region signature. 425 446 IPR017441 GO:0005524
Seca11g00683 775 Gene3D HUPs 4 166 IPR014729 -
Seca11g00683 775 CDD RING-Ubox_WDSUB1-like 703 757 - -
Seca11g00683 775 SMART Ubox_2 705 767 IPR003613 GO:0004842|GO:0016567
Seca11g00683 775 ProSiteProfiles U-box domain profile. 701 774 IPR003613 GO:0004842|GO:0016567
Seca11g00683 775 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 772 IPR013083 -
Seca11g00683 775 PANTHER OS02G0152300 PROTEIN 7 766 - -
Seca11g00683 775 ProSiteProfiles Protein kinase domain profile. 419 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00683 775 SUPERFAMILY RING/U-box 702 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00683 Seca-Chr11 6745842 6752030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00683 6 769 Plant U-box Gene Family AT5G57035 52.273 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca11g00683 PK_Tyr_Ser-Thr 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00683 - - gmx:100805896 1246.88