Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00668 ATGGACGGTGGAGGGCAGTACAATCATCGTACCGTGGAGGACGTTTTCAGGGACTTCAAGGGCCGAAGAACCGGCATAATCAAGGCTCTCACTACTGATGTTGAAGAATTTTTCCAGCAGTGCGATCCTGAAAAGGACAATCTTTGCCTGTATGGGTTCCCAAATGAACAATGGGAAGTGAATTTACCTGCGGAAGAAGTCCCTCCGGAACTTCCTGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCTGTTCATGCTGATGCATGGCTACTTGCAGTGGCTTTCTTCTTTGGGGCAAGATTTGGTTTTGATAAAGCTGACAGGAAGCGTCTGTTCACTCTGATTAATGATCTACCAACAATATTTGAGGTTGTGACTGGAACTGCAAAGAAACAGGCTAAGGATAAGTCATCCGTTTCCAACCTCAACAGCAACAAATCAAAGTCCGGCTCAAAAATGCGAGGATCTGATCCAGGGAAGTATTCAAAGCAAGCAAAGGACGAGGATGAGGGATTGGATGAAGAAGATGAGGATGAGCATGGAGAGACCTTGTGTGGCGCATGCGGGGAGAACTATGCATCTGATGAGTTCTGGATTTGTTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCTAGGGCCGAGCACATTAAGCAGTATAAGTGTCCCTCATGCAGCAATAAGAGAGCACGGCCTTGA 753 0.4701 MDGGGQYNHRTVEDVFRDFKGRRTGIIKALTTDVEEFFQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHADAWLLAVAFFFGARFGFDKADRKRLFTLINDLPTIFEVVTGTAKKQAKDKSSVSNLNSNKSKSGSKMRGSDPGKYSKQAKDEDEGLDEEDEDEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00668 250 Pfam PHD-finger 197 246 IPR019787 -
Seca11g00668 250 MobiDBLite consensus disorder prediction 147 190 - -
Seca11g00668 250 FunFam PHD finger alfin-like protein 189 245 - -
Seca11g00668 250 MobiDBLite consensus disorder prediction 147 164 - -
Seca11g00668 250 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Seca11g00668 250 SUPERFAMILY FYVE/PHD zinc finger 186 247 IPR011011 -
Seca11g00668 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 245 IPR013083 -
Seca11g00668 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Seca11g00668 250 CDD PHD_AL_plant 196 246 IPR044104 -
Seca11g00668 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Seca11g00668 250 SMART PHD_3 196 244 IPR001965 -
Seca11g00668 250 PANTHER CPG BINDING PROTEIN 8 249 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00668 Seca-Chr11 6628566 6631299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00668 1 249 Alfin-like Transcription Factor Family AT3G42790 77.381 9.07e-126 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Seca11g00668 Alfin 2.7e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00668 K26274 - gmx:100500110 427.943