Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00665 ATGTACAATTGTTCACAAATTCATTCTAGTCACTCAATGGCTCATGCTCCTTATCCTTATGGTGATCCTTCTTTTGGTGGTTCATTAGTTGCTTATGGACCACATGCTATTAATCAACCCCAAATGTTACCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCACTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGAAAGCCATATCTTCACGAGTCTCGTCACCGCCATGCATTGAAAAGAGTTAGGGGGTCTGGGGGACGCTTTCTTAGCGCCAAACAGATGCAGCAATCTAGTGCTGAACTAGTCCCTGATACCCGTCCAGGCTCTGACCATGTCAATGTTTATCAAAGGAAAGATGCATCAGAGGTGGAAAGTCATCCCTCAAGAACTGGAGAAAATGCATCTTCTTCTATCACAACTTGCTCTGGCCAAACAAGTATGTCCAGTAACAGTGTTAATTTTAGGCAGCAAGAGCACAAGTTCTTGGGGAACTCTCCAAACATTGGTGGAGCATCACAATGCAGTGGAGGACTCACCTTTGGTGGGGGAACTCAGCAATATGCTTCATTCGGCCGGTGA 672 0.4494 MYNCSQIHSSHSMAHAPYPYGDPSFGGSLVAYGPHAINQPQMLPQMLGLASTRIALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSAKQMQQSSAELVPDTRPGSDHVNVYQRKDASEVESHPSRTGENASSSITTCSGQTSMSSNSVNFRQQEHKFLGNSPNIGGASQCSGGLTFGGGTQQYASFGR. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00665 223 MobiDBLite consensus disorder prediction 120 134 - -
Seca11g00665 223 PRINTS CCAAT-binding transcription factor subunit B signature 96 119 IPR001289 GO:0003700|GO:0006355
Seca11g00665 223 PRINTS CCAAT-binding transcription factor subunit B signature 65 87 IPR001289 GO:0003700|GO:0006355
Seca11g00665 223 MobiDBLite consensus disorder prediction 115 181 - -
Seca11g00665 223 MobiDBLite consensus disorder prediction 142 157 - -
Seca11g00665 223 SMART cbf3 61 122 IPR001289 GO:0003700|GO:0006355
Seca11g00665 223 ProSitePatterns NF-YA/HAP2 subunit signature. 67 87 IPR018362 GO:0003677|GO:0016602
Seca11g00665 223 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 184 IPR001289 GO:0003700|GO:0006355
Seca11g00665 223 ProSiteProfiles NF-YA/HAP2 family profile. 62 122 IPR001289 GO:0003700|GO:0006355
Seca11g00665 223 Gene3D - 62 124 - -
Seca11g00665 223 MobiDBLite consensus disorder prediction 158 181 - -
Seca11g00665 223 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 65 119 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00665 Seca-Chr11 6611232 6615465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00665 5 129 CCAAT-HAP2 Transcription Factor Family AT1G17590 60.630 8.95e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca11g00665 CBFB_NFYA 4.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00665 K08064 - gmx:100792905 350.903