Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00662 ATGCTGACGTGCATAGCTCGTCCCAAGAAACCCGGCAATGACTCACTGAGTAAGCCAGAAGATTCCGATCCGAACAACGCGACAAACGCCGCTAAAAGCCAAGCCATCAAATCCCTAACTTCTCAGTTAAAGGATATGGCGTTGAAGGCATCGGGGGCGTACAAGCATTGCGCCCCGTGCACGGGGCCACAGACGCAGGGTCGACTCAGGAGCAACACCGAGTCGGACGCGGACTCGGATCGGTTCCGATGGTCGTACCGGAGAACGGGAAGCTCGAGCTCGACGACGACGAGGACATGGGGGAAGGAGATGGAGGCAAGGCTGAAGGGAATTTCGAGCGGGGAAGGGACGCCGAACTCCGCCAGTGGGCGGCGGGTGGAGCCGGTGGTGCTGTTCGTGGAAGAGAATGAACCGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATTACCTTCGTGTCGTTGCCGCGTGGCGGGAACGATCTCAAGCGCATACGATTCAGTCGAGAGATGTTCAATAAATGGCAAGCTCAAAGGTGGTGGGCAGAGAACTATGATAAGGTCATGGAACTATACAATGTTCAGAGGTTTAACCGCCAAGCATTCCCCCTTCCAACTCCACCAAGGTCTGAAGATGAGAGCTCAAAGCTTGAATCAGCAGAAGACAGCCCTGTAACACCTCCACTAACCAGGGAACGGTTACCTCGTAATGTGTACCGTCCAACAGGGATGGGAATGGGATATTCATCCTCAGATTCCTTTGATCATCAGTCAATGCAATCCCGGCATTTCTTTGACTCCAATGGTATGAACTCAACCCCTAAAGTCTCCACCATTAGTGCGGCCAAGACAGAGATATCATCAATGGATGCTTCTATTAGAAGTAGCTCATCAAGAGAGGCTGATCGCTCGGGTGATTTATCAATCAGCAATGCTAGTGACTTGGAGACTGAATGGGTTGAGCAGGATGAACCCGGTGTTTACATTACCATCAGAGCTTTACCAGGTGGCAAAAGGGAGCTCAGACGAGTCAGGTTCAGCCGAGAAAAATTTGGGGAAATGCATGCTAGATTATGGTGGGAGGAGAACCGTGCCAGAATACATGAACAATACTTGTAA 1122 0.5196 MLTCIARPKKPGNDSLSKPEDSDPNNATNAAKSQAIKSLTSQLKDMALKASGAYKHCAPCTGPQTQGRLRSNTESDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRVEPVVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAFPLPTPPRSEDESSKLESAEDSPVTPPLTRERLPRNVYRPTGMGMGYSSSDSFDHQSMQSRHFFDSNGMNSTPKVSTISAAKTEISSMDASIRSSSSREADRSGDLSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQYL. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00662 373 ProSiteProfiles BRX domain profile. 139 194 IPR013591 -
Seca11g00662 373 MobiDBLite consensus disorder prediction 202 232 - -
Seca11g00662 373 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 373 IPR044532 -
Seca11g00662 373 MobiDBLite consensus disorder prediction 290 310 - -
Seca11g00662 373 Pfam Transcription factor regulating root and shoot growth via Pin3 317 372 IPR013591 -
Seca11g00662 373 Pfam Transcription factor regulating root and shoot growth via Pin3 139 193 IPR013591 -
Seca11g00662 373 Coils Coil 369 373 - -
Seca11g00662 373 MobiDBLite consensus disorder prediction 1 38 - -
Seca11g00662 373 ProSiteProfiles BRX domain profile. 318 373 IPR013591 -
Seca11g00662 373 MobiDBLite consensus disorder prediction 18 38 - -
Seca11g00662 373 Pfam Transcription factor BRX N-terminal domain 28 60 IPR027988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00662 Seca-Chr11 6582194 6587868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00662 1 373 Major Intrinsic Protein MIP AT1G31880 44.872 1.11e-92 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00662 - - gmx:100794109 666.766