Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00659 ATGGGTGATTTTCAAGGCTCATACACAGTGTCTCCTCCTCCTGCTCCCTTATCCTCAGATAAGGCCAGCCTAGCCATATTATATTATGGCCTAGTAGTGGTGGGAACTGCAGCCATAGCATTAACCGTATACAACCTCATCATCATGAAACGAAACAGGGGACGCAATATGCAATCACAGCATGAAAGGCCAAGTGGGTTGGTTGAAGTGGTCATGGAAAGTAGCATTGAGAACACCCAAAGGAGGTTGCTTTCAAGCTTCAAGTACAAAAAAGAAGGAGGGGGTGGTGGGGATGATTATGAATGCCCAGTTTGTTTATCAGGTTTTGAAGAAGGGGAAGAGGTGAGGAAGCTACCACGGTGTAAGCACTCGTTTCATGCTCAATGCATAGACATGTGGCTCTACTCTCACTTCGATTGCCCAATTTGTCGAACACCTGTTGGACCATTCTGTACTCACCGTTTCCCGCCGGAGAATTCTCGTCCCCGATTGCCGGAATCCGGCGGCGTCTCATCAGTTTGA 522 0.4789 MGDFQGSYTVSPPPAPLSSDKASLAILYYGLVVVGTAAIALTVYNLIIMKRNRGRNMQSQHERPSGLVEVVMESSIENTQRRLLSSFKYKKEGGGGGDDYECPVCLSGFEEGEEVRKLPRCKHSFHAQCIDMWLYSHFDCPICRTPVGPFCTHRFPPENSRPRLPESGGVSSV. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00659 173 CDD RING-H2_EL5-like 102 144 - -
Seca11g00659 173 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Seca11g00659 173 Pfam Ring finger domain 101 144 IPR001841 -
Seca11g00659 173 FunFam RING-H2 finger protein ATL52 68 149 - -
Seca11g00659 173 SMART ring_2 102 143 IPR001841 -
Seca11g00659 173 SUPERFAMILY RING/U-box 97 151 - -
Seca11g00659 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 151 IPR013083 -
Seca11g00659 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00659 Seca-Chr11 6566301 6566822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00659 91 147 C3H Transcription Factor Family AT5G10380 57.895 5.19e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00659 - - gmx:102668213 225.328