Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00657 ATGGAAACTATAATACCAGATTGTGAGATCATTGGAAATCCAAAGTCATTTGTGGAATCTGATTTACCAACTCAGGAAGTTTTACCTAATAACAATATACAGAATTCATCCGGGAGTAATAATTATCATCAGCCAGCTCAAAATGCAAGTTGTAATGTGCAGAATTTAAGGCCAACTGTTCAACCTCCATACCAGCCACCTCCGGTTTACAAAAGCCATGGTGCAATAGTGAGAAATGAAGCCCCGACACGTATTATTCCAATATCTGCTTTAAATCCTTATCAAGGTCGGTGGGCCATCAAGGCAAGGGTGACTGCAAAAGGGGATCTGCGCCGCTATAATAATGCCAGGGGAGATGGGAAGGTCTTCTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATACGAGTAACCTGCTTTAATACAGTTGTTGATCGCTTCTATGATGCAATCGAGGTTGGTAGAGTTTACATGTTATCCAAAGGTAGCTTGAAACCTGCGCAGAAGAACTTCAACCATTTAAAGAATGAATGGGAAATTCTTTTGGATTTGACATCAACTGTTGAACTTTGCCCGGAGGAAGATGGTACTATACCTAGACAGCAATTCTCCTTTCGGCCCATCATTGATATTGAGAATGTTGACAGTAACTGCATACTTGATGTTATTGGGGTTGTGACATCTGTGAATCCATCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAAAGAAGAATTTTGAACCTAAAGGACTGTTCTGGTAGGAGTGTTGAACTAACCCTTTGGGGTGAATTTTGCAACAGGGAAGGGCAAAAGTTGCAAGAGATGGTCGATGCTAGGTTTTTCCCCATTCTGGCAGTCAAAGCTGGGAAGGTCAATGACTTTAGTGGGAAATCTATAGGGACTATTTCTGCTACACAGCTTTTCATAAATCCAGATTTCTCTGAGGCATGTAGCTTAAGGGACTGGTTTGATCGAGTGGGAAAAGATTCTGCTTCTCTGTCCATTTCTAAGGACATTATACCTGGAGGACCTAAGAATGACGTACGTAAAACTGTTTCTCAGATCAAGGATGAAGGTCTGGGGCGATCAGATAAGCCAGATTGGATAACAGTGAGGGCAACGATATCTTTCATCAAAACTGATACATTTTGTTACACAGCTTGTCCTCTGATGGTTGGAGATCGACAGTGTAATAAAAAAGTGACTAAGTCAGGAAACACAAGATGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAATGTGATTACCGATATCTTCTTCAAGCTCAAATTCTGGATCACACAGGAATAACTTGGGTAACTGCTTTCCAGGAATCAGGGGAAGAGATTTTGGGTTACTCAGCAAAGGAGTTGTACCTGCTGAAGTATGAACAGCAGGATGATGAGAAGTTTGCAGGAATAATCAAGAGTGGGCTCTTCAACCAATTTGTCTTCAGGCTAAAAATTAAAGAGGAATTGTATGGCGATGAACAGAGGGTGAAGATTACAGTCGTTAAGGCAGGCAAGGTGAATTATTCTTCAGAGAATGGAAACATGCTGGATTTGATTTCAAAGTTTTATAGGCAATAA 1596 0.4098 METIIPDCEIIGNPKSFVESDLPTQEVLPNNNIQNSSGSNNYHQPAQNASCNVQNLRPTVQPPYQPPPVYKSHGAIVRNEAPTRIIPISALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNTVVDRFYDAIEVGRVYMLSKGSLKPAQKNFNHLKNEWEILLDLTSTVELCPEEDGTIPRQQFSFRPIIDIENVDSNCILDVIGVVTSVNPSVPILRKNGMETQRRILNLKDCSGRSVELTLWGEFCNREGQKLQEMVDARFFPILAVKAGKVNDFSGKSIGTISATQLFINPDFSEACSLRDWFDRVGKDSASLSISKDIIPGGPKNDVRKTVSQIKDEGLGRSDKPDWITVRATISFIKTDTFCYTACPLMVGDRQCNKKVTKSGNTRWQCDRCNQEFEECDYRYLLQAQILDHTGITWVTAFQESGEEILGYSAKELYLLKYEQQDDEKFAGIIKSGLFNQFVFRLKIKEELYGDEQRVKITVVKAGKVNYSSENGNMLDLISKFYRQ. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00657 531 FunFam Replication protein A subunit 336 528 - -
Seca11g00657 531 FunFam Replication protein A subunit 84 194 - -
Seca11g00657 531 CDD RPA1_DBD_A 87 190 - -
Seca11g00657 531 PANTHER REPLICATION FACTOR A 1, RFA1 98 505 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca11g00657 531 Gene3D - 83 193 IPR012340 -
Seca11g00657 531 CDD RPA1_DBD_B 219 326 - -
Seca11g00657 531 FunFam Replication protein A subunit 197 335 - -
Seca11g00657 531 SUPERFAMILY Nucleic acid-binding proteins 351 528 IPR012340 -
Seca11g00657 531 SUPERFAMILY Nucleic acid-binding proteins 202 329 IPR012340 -
Seca11g00657 531 Pfam Replication protein A OB domain 208 312 IPR031657 -
Seca11g00657 531 Gene3D - 197 335 IPR012340 -
Seca11g00657 531 Pfam OB-fold nucleic acid binding domain 99 177 IPR004365 GO:0003676
Seca11g00657 531 SUPERFAMILY Nucleic acid-binding proteins 85 196 IPR012340 -
Seca11g00657 531 Gene3D - 340 529 IPR012340 -
Seca11g00657 531 NCBIfam replication factor-a protein 1 (rpa1) 10 527 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca11g00657 531 CDD RPA1_DBD_C 354 527 IPR047192 -
Seca11g00657 531 Pfam Replication factor-A C terminal domain 370 519 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00657 Seca-Chr11 6562249 6564074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00657 1 527 Core DNA Replication Machinery Family AT2G06510 69.797 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00657 K07466 - zju:107409151 866.3