Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00650 ATGGGGAGAAGCCCTTGTTGTTCAAAGGAGGGCTTGAATAGAGGTGCTTGGACTGCTCATGAAGACAAAATCCTCACTGATTACATTAGGCTCCATGGCGAAGGAAAATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGATGTGGCAAAAGTTGCAGACTTCGATGGTTGAATTATCTCAGACCAGATATTAAGAGAGGCAATATATCCTCTGATGAAGAAGAGCTTATCATCAGGCTTCACAATTTACTGGGAAACAGATGGTCTCTGATAGCAGGAAGGCTTCCAGGGCGAACAGACAATGAAATTAAGAATTACTGGAACACCAATTTAGGAAAAAAAATTAAAGATAGCCACCAAACCACTAACACTTGTTCTCGTAGACTCTGTGTTCAAACCAATGGAAAGAGCACGCAGAAAAATCCAAAGCCTCAATTATTTAGCACTTTCTTACTATCTCCTCCTAAGGTGGACTCTCATGTGGTCCGTACAAAGGCTACCAAATGCTCTAAGGCAGTATTCATAAACTCACAGCTCCCTCACTCATCATCATCAACACAATTGCATAACAATTCTGAGGCAGAGGCAAAGCCATTGACTTTGGATAATGCTGTGGCCGGTAATTCAATGAGTAACCAAATGGAACCTGTTGGTGATAATGGGTTTTTGTCATTTCCAAGTAGTGAAGAAAAAGATTTGCTCATTGATTTTAATGTGGGGGATATTTGTTTATCTGATCTTCTGAATTCAGATTTCTCAAACATGTGCAATTTCAGTTACAGTAACGACCATAACAACCCCGAGCTGTTATCACCTGGTTGTTCAGATCAGCCTCTTATGTTCTCTGATGAAATTTTCAAGGACTGGACACAGAGCAATCTTGCTGATGAAACCAACAACCTATATTCTTTCAATTCGTTCCTTGAGTCAAGTGAGGAGGATGAAATACTTGGAGAATAA 963 0.4029 MGRSPCCSKEGLNRGAWTAHEDKILTDYIRLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKIKDSHQTTNTCSRRLCVQTNGKSTQKNPKPQLFSTFLLSPPKVDSHVVRTKATKCSKAVFINSQLPHSSSSTQLHNNSEAEAKPLTLDNAVAGNSMSNQMEPVGDNGFLSFPSSEEKDLLIDFNVGDICLSDLLNSDFSNMCNFSYSNDHNNPELLSPGCSDQPLMFSDEIFKDWTQSNLADETNNLYSFNSFLESSEEDEILGE. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00650 320 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca11g00650 320 CDD SANT 16 61 IPR001005 -
Seca11g00650 320 FunFam Transcription factor TT2 70 142 - -
Seca11g00650 320 FunFam MYB-related transcription factor 13 66 - -
Seca11g00650 320 Gene3D - 71 141 - -
Seca11g00650 320 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 206 - -
Seca11g00650 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca11g00650 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca11g00650 320 CDD SANT 71 112 IPR001005 -
Seca11g00650 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca11g00650 320 SMART sant 13 63 IPR001005 -
Seca11g00650 320 SMART sant 66 114 IPR001005 -
Seca11g00650 320 Gene3D - 14 66 - -
Seca11g00650 320 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca11g00650 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca11g00650 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00650 Seca-Chr11 6502850 6504461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00650 1 116 MYB Transcription Factor Family AT4G09460 73.276 2.63e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g00650 Myb_DNA-binding 9.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00650 K09422 - gmx:100802704 416.772