Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00618 ATGAAATTCCCGTGGAAATCGATCTTTCCTAGTTGTTATAAGGGTGATCAATATTCCTCACCCATGCCCACCAAAGTGGTAGCTACAAAGGCTAGTTCTTTTAACAGGATCTCTGTCACGGATTTGAGTTTTCCAAGTGCTACCACTCTTTCAGAGGATCTTTCCGTTTCTCTAGCAGGATCTAACCTGCATGTTTTCACACTCGCTGAGCTCAAGATTATCACACAGACCTTCTCTTCAAGTAACTTTCTTGGAGAAGGAGGGTTTGGACCTGTCCATAAGGGGTTCATTGATGACAAGCTTAGACCTGGTCTTGAGGCTCAGCCAGTTGCTGTCAAACTCTTGGATTTGGATGGTACTCAGGGTCATAAAGAGTGGCTGACTGAAGTTGTGTTTCTGGGTCAACTAAGGCATCCACACCTTGTGAAGCTGATTGGATATTGCTGTGAAGAAGAACACAGGCTTTTAGTATATGAATATCTACCACGAGGCAGCTTAGAGAATCAACTATTTAGAAGTAAGTTTTTCTTTTTCAATTTTCATAGCCTTAAAAAATTAAACATTTTTATTTTTGGCATTTTTTCAGGATACTCAGCATCATTACCATGGTCTACAAGAATGAAAATTGCAGTTGGAGCTGCAAAGGGTCTAGCTTTTCTACATGAAGCAAAGAAACCAGTCATCTATAGAGATTTCAAAGCTTCAAACATTTTGTTAGACTCTGATTATAATGCAAAGCTCTCTGATTTTGGCTTGGCAAAAGATGGTCCTGAAGGGGATGACACACATGTTTCAACTAGAGTCATGGGCACACAAGGGTATGCAGCCCCTGAATATATCATGACAGGACATTTGACAGCAATGAGTGATGTGTATAGTTTTGGAGTTGTCCTCTTGGAGCTATTAACAGGGAGAAGGTCAGTGGACAAAGGAAGACCAGCAAGGGAACAGAACCTGGTGGAATGGGCCAGACCAGTCTTAAATGATTCAAGAAAACTTAGCAGAATAATGGATCCAAGGCTTGAGGGACAATATTCTGAGATGGGGGCAAAAAAAGCAGCTGCATTGGCTTATCAATGCCTCAGCCATAGGCCAAGGAATAGGCCTTCAATGACCACAGTGGTTAAGATTCTTGAGCCTCTTCAAGAGTTTGATGATATTCCAATTGGACCTTTTGTTTACACTGTTCCAGCTGATCATAATGAAGTGATTAGTGAAACACCTAAGGAGAGAAAGAGGGAAAATGGTCATCATCACAGGAATCCTAAGCATAATGATAATGATCAAGTGCATAGAGATAGAGATGCAAAAGAGGATGACACACCAAGGGAAAGGAAAAGGGAAAATGGTCACCATCACCGAAATCACCATCGCCATAATGGACATAGGCATCATCCACTTAAATCGCCAAAGTCACACTCACAAAATGATCATGAACACCAAAATAGTAGAAGAAGAAGTGGGTCACATTCACCTGACACATCCATTGCATCACAAGCCCAAGGAAGCATAGCTTAG 1518 0.4144 MKFPWKSIFPSCYKGDQYSSPMPTKVVATKASSFNRISVTDLSFPSATTLSEDLSVSLAGSNLHVFTLAELKIITQTFSSSNFLGEGGFGPVHKGFIDDKLRPGLEAQPVAVKLLDLDGTQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRSKFFFFNFHSLKKLNIFIFGIFSGYSASLPWSTRMKIAVGAAKGLAFLHEAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKGRPAREQNLVEWARPVLNDSRKLSRIMDPRLEGQYSEMGAKKAAALAYQCLSHRPRNRPSMTTVVKILEPLQEFDDIPIGPFVYTVPADHNEVISETPKERKRENGHHHRNPKHNDNDQVHRDRDAKEDDTPRERKRENGHHHRNHHRHNGHRHHPLKSPKSHSQNDHEHQNSRRRSGSHSPDTSIASQAQGSIA. 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00618 505 MobiDBLite consensus disorder prediction 420 447 - -
Seca11g00618 505 CDD STKc_IRAK 84 381 - -
Seca11g00618 505 Gene3D Phosphorylase Kinase; domain 1 41 160 - -
Seca11g00618 505 ProSiteProfiles Protein kinase domain profile. 78 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00618 505 MobiDBLite consensus disorder prediction 448 469 - -
Seca11g00618 505 MobiDBLite consensus disorder prediction 488 505 - -
Seca11g00618 505 SUPERFAMILY Protein kinase-like (PK-like) 51 378 IPR011009 -
Seca11g00618 505 MobiDBLite consensus disorder prediction 407 505 - -
Seca11g00618 505 Gene3D Transferase(Phosphotransferase) domain 1 189 387 - -
Seca11g00618 505 PANTHER OS01G0588500 PROTEIN-RELATED 57 382 - -
Seca11g00618 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Seca11g00618 505 FunFam Serine/threonine-protein kinase BIK1 45 160 - -
Seca11g00618 505 Pfam Protein tyrosine and serine/threonine kinase 82 378 IPR001245 GO:0004672|GO:0006468
Seca11g00618 505 FunFam Serine/threonine-protein kinase PBS1 185 388 - -
Seca11g00618 505 MobiDBLite consensus disorder prediction 470 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00618 Seca-Chr11 6140416 6142927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00618 64 378 Glycoside Hydrolase AT3G07070 50.000 3.97e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca11g00618 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00618 - - gmx:100799411 734.561