Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00605 AAGCTCCATCACCAATCTCCCCTTTCCTCTCTCAAACATGACAAGCTTCCTTTGGCCACCCAAATCCAACAAAACAAAAAAAGGCAAATCCATCACTCAGGGAACCTCATTCTCTCCGAGCAGCGGTCCATTTCTATCCGGACGCCTAACCTCTCCGGCACGGCAATGGCCGCTGTTCGTTCTCATTTCTTCTTCTTCTTCTTCTTTTTCTTTCTCCTCTTCTTCTCTCCTTCCTTCTCCATTTCAGAAAACGAAGCCCTCCTCAAACTCAAACAATCCTTCACCAACACCCAATCCCTCTCTTCCTGGGTTCCCAATCAGAACCCTTGCACTTCCAAGTGGGTTGGCGTCATCTGTTTCAACAACATCATCTCCAGCCTTCACCTCACCGATTTGGGTCTCTCTGGCTCCATCGACATCGATTCCCTCATTCAGATTCCCTCACTCCGAACCATCAGCTTCGTCAACAACTCCTTCTCTGGCCCCATGCCTCCATTCAACAAACTCGGTGCTCTCAAAGCTATTTACCTATCCGAGAACCAATTCTCTGGCCCTATTCCCCCAGATTTCTTCGCCCATTTAGCTTCCCTCAAGAAGGTATGGCTCTCCAACAACAAATTCTCTGGAAACATACCTGACTCCATAACCACCCTTCGTTTCCTCACCGAATTGCATCTCGAGAACAACGACTTCTCAGGGCCTGTCCCTGAACTCAAACAGGATCTTAAATCCTTCGACATGTCTAACAACAAATTACAAGGTTCAATACCCGCTAGCATGTCAAGGTTCAATGCCAATTCCTTCCAGGGTAACGAAGCTCTCTGTGGGAAGCCTCTGGAGAAAGAGTGTGATCCATCAGAGGGACAAGGTTCTGGTATGGTCACCAAGGTTATTACCATTCTTGTTATTGTGGCAGTGTTGGTGGTGGTTTTCACGTTCCTTAAGTCAAAGCGTAACCGTGATGATGATTTCAGCGTGATGAGTAGAGGCGCATCAGAGGAGGTGGTGCAGGTGCACGTGCCAAGCTCGAAGCATAGCAGAACATCGGAGGGTAGTAGTAGGAAGGAATCAAAGAAAGGGTCTTCGAGGAGTGGTGGGATGGGTGACCTTGTGATGGTGAATGATGAAAAGGGTGTGTTTGGGTTGCCAGATTTGATGAAGGCTGCTGCTGAGGTTTTGGGAAATGGTGGGTTAGGTTCTGCCTATAAGGCTGCCATGGCTAATGGATTGTCTGTGGTGGTTAAGAGGATGCGAGAGATGAATAAAGTAAGCAGAGACATATTTGATGCTGAGATGAGAAGATTTGGAAGGCTAAGAAACCGTAACATTATGACACCTTTGGCTTACCATTACCGCAGGGAGGAAAAGCTATTTATCACTGAATACATGCCCAAAGGAAGCTTGTTATATGTCTTGCATGGTGACAGAGGAACAAGCCATGCTGAGCTGAATTGGCCTACTCGTTTGAAGATTGTGAAGGGGATTGCACGAGGGTTGGGCTTTCTATATACTGAATTTGCTTCAGAAGAGCTGCCTCATGGAAACCTGAAATCCAGCAATGTTTTACTAGCTGATGATCATGAGGCTCTCTTGAGTGACTTTGCCTTTCATTCACTCATCAACCCCAGCTATGCTATACAGACATTGTTTGCCTACAAAACTCCTGATTACATGCTGTACCAACAGGTTTCACAGAAGAGTGATGTTTATTGCCTTGGAATTATCATTCTTGAGATTATTACTGGGAAATTCCCTTCTCAATATCACAGTAATGGGAAAGGTGGGACAGATGTGGTGCAATGGGTCTTCACAGCAATTTCTGAGAGAAGAGAGGCAGAATTGATTGATCCAGAGTTATCAAGTGAGACAAATTCAATCAATAACATGCTGCAACTTCTCCAAATTGGGGCTGCTTGCACAGAGAGCAACCCTGAACAGAGACTTAACATGAAGGAAGCCATTAGGAGGATAGAGGAGGTACAGGTTTAA 1989 0.459 KLHHQSPLSSLKHDKLPLATQIQQNKKRQIHHSGNLILSEQRSISIRTPNLSGTAMAAVRSHFFFFFFFFFLLFFSPSFSISENEALLKLKQSFTNTQSLSSWVPNQNPCTSKWVGVICFNNIISSLHLTDLGLSGSIDIDSLIQIPSLRTISFVNNSFSGPMPPFNKLGALKAIYLSENQFSGPIPPDFFAHLASLKKVWLSNNKFSGNIPDSITTLRFLTELHLENNDFSGPVPELKQDLKSFDMSNNKLQGSIPASMSRFNANSFQGNEALCGKPLEKECDPSEGQGSGMVTKVITILVIVAVLVVVFTFLKSKRNRDDDFSVMSRGASEEVVQVHVPSSKHSRTSEGSSRKESKKGSSRSGGMGDLVMVNDEKGVFGLPDLMKAAAEVLGNGGLGSAYKAAMANGLSVVVKRMREMNKVSRDIFDAEMRRFGRLRNRNIMTPLAYHYRREEKLFITEYMPKGSLLYVLHGDRGTSHAELNWPTRLKIVKGIARGLGFLYTEFASEELPHGNLKSSNVLLADDHEALLSDFAFHSLINPSYAIQTLFAYKTPDYMLYQQVSQKSDVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVFTAISERREAELIDPELSSETNSINNMLQLLQIGAACTESNPEQRLNMKEAIRRIEEVQV. 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00605 662 Pfam Leucine rich repeat 172 231 IPR001611 GO:0005515
Seca11g00605 662 FunFam Nuclear pore complex protein NUP107 80 237 - -
Seca11g00605 662 SUPERFAMILY Protein kinase-like (PK-like) 391 657 IPR011009 -
Seca11g00605 662 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 68 661 IPR046959 -
Seca11g00605 662 Gene3D Ribonuclease Inhibitor 191 285 IPR032675 -
Seca11g00605 662 Gene3D Phosphorylase Kinase; domain 1 393 463 - -
Seca11g00605 662 Gene3D Transferase(Phosphotransferase) domain 1 464 662 - -
Seca11g00605 662 MobiDBLite consensus disorder prediction 335 368 - -
Seca11g00605 662 MobiDBLite consensus disorder prediction 348 362 - -
Seca11g00605 662 Gene3D Ribonuclease Inhibitor 82 190 IPR032675 -
Seca11g00605 662 Pfam Leucine rich repeat N-terminal domain 83 119 IPR013210 -
Seca11g00605 662 ProSiteProfiles Protein kinase domain profile. 387 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00605 662 SUPERFAMILY L domain-like 80 263 - -
Seca11g00605 662 Pfam Protein kinase domain 391 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00605 Seca-Chr11 6003166 6006079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00605 64 662 Receptor kinase-like Gene Family AT3G42880 52.923 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca11g00605 Pkinase 2.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00605 - - vum:124828555 922.539