Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00603 ATGTCGCCGTCGAAGTCACCGGAGAAGTCCGCGTTCTCTCAGACTTGCAGTCTATTGAGCCAATACCTCAAGGAGAAGGGAAGCTTCGGAGACCTTACCCTCGGGATGACATGCAACAACGAAACAAATGGGTCTCCCGAGACATCTTGTCACTCTACAACAACCATGGAGTTGTTCCCTACCAAGGTGACACCACAAAACCTCACAGCCATGGATTTGCTCTCTCCACCCGCCGTTTATCCTCTGCACACTGAGGTTCCAACTTTGGTTAACTCAAGTGCATTTAAGTCTGTGGGCAAGGAGCCTAAAGCTTCACAGTTGACAATCTTTTATGGTGGACAAGTTGTTGTATTTGATGATTTTCCTGCTGACAAAGTGGAGGAGATAATGTCATTGGCCAGAAAAGGAACCTCCCAAAGCCACAACTCCTCTGCATATGCTTACACTCAGAATCAGCCTTCAATGATGATTCCTAATATCAACTCTCAAGCTCCTTCCAGACCAATTGCTAGTGAAATTCATGTCAATACAGGCTTACCAATTGCTAGGAAAGCTTCACTTCATCGGTTCCTGGAGAAGAGGAAAGATAGAATTGCTGCCAAAGCACCATATCAAACAAACAATCCCGTCTCTGCCCCTAACAAGCCGACTGAATCCATTTCATGGCTCGGGCTAGGTGCAAAATGA 687 0.4629 MSPSKSPEKSAFSQTCSLLSQYLKEKGSFGDLTLGMTCNNETNGSPETSCHSTTTMELFPTKVTPQNLTAMDLLSPPAVYPLHTEVPTLVNSSAFKSVGKEPKASQLTIFYGGQVVVFDDFPADKVEEIMSLARKGTSQSHNSSAYAYTQNQPSMMIPNINSQAPSRPIASEIHVNTGLPIARKASLHRFLEKRKDRIAAKAPYQTNNPVSAPNKPTESISWLGLGAK. 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00603 228 Pfam Jas motif 180 205 IPR018467 -
Seca11g00603 228 MobiDBLite consensus disorder prediction 204 218 - -
Seca11g00603 228 MobiDBLite consensus disorder prediction 198 228 - -
Seca11g00603 228 SMART tify_2 100 135 IPR010399 -
Seca11g00603 228 ProSiteProfiles Tify domain profile. 100 135 IPR010399 -
Seca11g00603 228 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 6 216 IPR040390 -
Seca11g00603 228 Pfam tify domain 101 133 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00603 Seca-Chr11 5986044 5987916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00603 8 228 Tify Gene Family AT1G19180 44.167 1.85e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca11g00603 tify 5.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00603 K13464 - gmx:100802800 319.701