Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00600 ATGCAGCCACAGAGGTTAAGGCAGCATGCCATGATGCAACACTCTCTCTATCACCACCCTGCTCTCCTTACTACCCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACAAGCCGCAGTGTTTATGTCGGCAACATTCATCCTCAGGTTACAGAAGTACTTCTTCAAGAACTTTTTTCAAATGCAGGCCTCCTTGAAGGATGCAAGCTTATTCAAAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTTGATCACAGTTCAGCTGCACTTGCTATTGTGACCCTCAATGGAAGGAATATTTTTGGACAGCCTATTAAAGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACATCAGGCCACTTTAATATTTTTGTTGGTGACCTTAGTCCTGAGGTTACAGATGCAACTTTATACGCTTGCTTCTCTGCATATCCTAGTTGTTCAGATGCACGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGTTTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCCCAAAGTGCCATAAATAATTTAACTGGGAAGTGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCCACAAAAGGGGCTAATGCCAATGATGAGAAGCAGGGTTCAGATTCAAAAAGTGTTGTGGAGTTAACTAATGGAACATCTGAGGAAGGCCAGGAAGTAATCAATGATGACGCCCCAGAGAAGAATCCACAATATACCACTGTTTACGTTGGCAATCTTGCTCCAGAGGCAAGGATTAGTATTATTTTCCCACTGTCTTTACCTTACAAGTCTTTCATATCTATCTGGATGTACCTTTTCTGGCTATTTTTAAATGTATATAGTATAAACTAG 891 0.4265 MQPQRLRQHAMMQHSLYHHPALLTTPQIEPILSGNLPPGFDSSTSRSVYVGNIHPQVTEVLLQELFSNAGLLEGCKLIQKEKSSYGFVDYFDHSSAALAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINNLTGKWLGSRQIRCNWATKGANANDEKQGSDSKSVVELTNGTSEEGQEVINDDAPEKNPQYTTVYVGNLAPEARISIIFPLSLPYKSFISIWMYLFWLFLNVYSIN. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00600 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Seca11g00600 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Seca11g00600 296 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 263 - -
Seca11g00600 296 SUPERFAMILY RNA-binding domain, RBD 124 219 IPR035979 GO:0003676
Seca11g00600 296 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Seca11g00600 296 MobiDBLite consensus disorder prediction 211 246 - -
Seca11g00600 296 CDD RRM2_PUB1 130 209 - -
Seca11g00600 296 Gene3D - 39 125 IPR012677 -
Seca11g00600 296 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
Seca11g00600 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Seca11g00600 296 SMART rrm1_1 132 205 IPR000504 GO:0003723
Seca11g00600 296 SMART rrm1_1 47 116 IPR000504 GO:0003723
Seca11g00600 296 MobiDBLite consensus disorder prediction 211 237 - -
Seca11g00600 296 Gene3D - 126 226 IPR012677 -
Seca11g00600 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00600 Seca-Chr11 5955896 5960415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00600 47 269 Eukaryotic Initiation Factors Gene Family AT3G16380 29.870 4.53e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00600 K13201 - gmx:100803322 492.271