Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00593 ATGGTGAAGCCTGGTTCGGAAAAAGCAGAGGAGAAAAATGAGAAAAACGATTACACATACAGAGGTGTTCGAAAGAGGAAGTGGGGCAAATGGGTGTCTGAAATCAGACTACCCAACAGTCGCCAGAGAATTTGGTTGGGATCCTATGACACCCCCGAGAAGGCGGCGCGTGCTTTCGATGCCGCCATGTTCTGCTTACGTGGCCACAACGGTAGGTTTAATTTCCCCGATAATCCGCCCGATATCGCCGGCGGCAGGTCCATGACGCCCTCTCAAATTCAGGCAGCAGCCGCCCGTTTTGCCAATTCGGGGCCCCAGGAGGGTCCCTCGGGTCGACCCGAAACAACTGAATCGGCTATGGAATGTTCGTCAGAGGGGACAATGATGCAAACCGAGTCTCCGTCGCCTTCTGTTTCGGAGGGGACTGTCCAAACTGACAGCGACGTGAACCTGAACGGTTCGTTTCCGGATTTGTTCACGCCGATCGGGTCGAGTGATTATGTATCGGATTATGGGATTTTCCCGGGTTTTGATGATTTTTACGTGCCGGAAATGCCTAGTAATGTTAATTATGGAGAAGAGAACACGGATGGGTTCATTGTTGATGACACTTTCTTGTGGAATTTCTGA 630 0.5111 MVKPGSEKAEEKNEKNDYTYRGVRKRKWGKWVSEIRLPNSRQRIWLGSYDTPEKAARAFDAAMFCLRGHNGRFNFPDNPPDIAGGRSMTPSQIQAAAARFANSGPQEGPSGRPETTESAMECSSEGTMMQTESPSPSVSEGTVQTDSDVNLNGSFPDLFTPIGSSDYVSDYGIFPGFDDFYVPEMPSNVNYGEENTDGFIVDDTFLWNF. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00593 209 CDD AP2 20 78 IPR001471 GO:0003700|GO:0006355
Seca11g00593 209 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Seca11g00593 209 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
Seca11g00593 209 MobiDBLite consensus disorder prediction 100 143 - -
Seca11g00593 209 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Seca11g00593 209 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Seca11g00593 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 131 - -
Seca11g00593 209 FunFam Ethylene-responsive transcription factor 2 19 77 - -
Seca11g00593 209 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Seca11g00593 209 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Seca11g00593 209 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Seca11g00593 209 MobiDBLite consensus disorder prediction 108 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00593 Seca-Chr11 5895417 5896046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00593 20 209 AP2-EREBP Transcription Factor Family AT1G19210 46.465 2.36e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca11g00593 AP2 5.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00593 - - gmx:732656 310.842