LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g00586	ATGGATATGGACCCTAACAATTTTTCTGACATTAATATGGGGGCTAATCACATTTCGGACAATGAACAGATAACACATTCTGATTTTCATGATGTGCCACGGTCGATCGTTATTGAAGAACACAATATTGAGCCTTCTATTGGAATGGAATTTGATTCCTTAGAAAAAGTTGTGGAATTTTATAAATCGTTTGCTAAGGCCAAAGGGTTTGGTATCCGTACCTGCTCTAGGAAAGAGAATTATTGCATTTTGGTATGTGTTAGGAAATGTGAAAATAAGGTGAAAAGTAATAATGGTGAAAAAGATATTGGCAAGAGAAGAGAAATTAAGAGAAAATGTCCAACCATACGTATGAGATGTCAAGCAGCACTTATTGTGTCAAAGGATAAGAATCGAGGCATATGGGTTATAAAGTCTTTTGACAATAACCATAATCATGTCATGGGTAGTCCTAAGAGCGTGTCTTATTTGAGGTGTCATAAAAAATGGGTGTTGCTGCAAAAAATCTTGTTGAGAAGTTTAATGAAGAAGAGGTGTATTCGAGAATCACCAATAATCAATGATTTTGAAGATGATTGGCAACGTATAATGGAAGTGTACAACTTGCAAGAAAATGAATGGCTTAAAGGGTTATTTGCAATTAGAGAGTTATGGATGCCAGTTTATAATAGAAGCACTTTTTTCGCTGGTATGAATACTACACAAAGAAGTGAGAGTGTTAATTCTTTCTTTGACTCATTTGTTGATGCAAGCACAACATTACGGGACTTTGTGGTGAAATTTGAGAAGGCGATTAATAATCGTTACGAGGATGAAAAAAGAGAGGACTTTGTGTCTAGACATAAATCCCGCATTCTGAGCATCGACTCAAAAATTGAGGAGGAGGATGCATCAATATATACTAGAAATGTGTTTGTGAAGTTTCATAATGAGCTTGCAAGTGTCAGTCATTTTACAAAGGAGAAGATTGAGAAAAATGGTTCACAATCCGCTACAATGGCAATTGAGCCACCTGTGGAGTCAACACAACAGAATTTTATGTGTGAAACACTTTGTGAATCAAATTCAAACATAAAAGATCCCAATGTATCACAAACAAAAGGTAGAAGAAAGAAAGATTCTAACAAAGTGCCTCCAGCTGAACGATATAGAAGTGGTCTAGAATTGTCAATTAATAAGACATTAGTTAAAAGGAGAGCATGTAAATGTTGTAGAGAATATGGTCATTATCAGTCAACATGTAAACAGAAGACATCTTAG	1260	0.3532	MDMDPNNFSDINMGANHISDNEQITHSDFHDVPRSIVIEEHNIEPSIGMEFDSLEKVVEFYKSFAKAKGFGIRTCSRKENYCILVCVRKCENKVKSNNGEKDIGKRREIKRKCPTIRMRCQAALIVSKDKNRGIWVIKSFDNNHNHVMGSPKSVSYLRCHKKWVLLQKILLRSLMKKRCIRESPIINDFEDDWQRIMEVYNLQENEWLKGLFAIRELWMPVYNRSTFFAGMNTTQRSESVNSFFDSFVDASTTLRDFVVKFEKAINNRYEDEKREDFVSRHKSRILSIDSKIEEEDASIYTRNVFVKFHNELASVSHFTKEKIEKNGSQSATMAIEPPVESTQQNFMCETLCESNSNIKDPNVSQTKGRRKKDSNKVPPAERYRSGLELSINKTLVKRRACKCCREYGHYQSTCKQKTS.	420

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g00586	419	Pfam	FAR1 DNA-binding domain	59	147	IPR004330	-
	Seca11g00586	419	MobiDBLite	consensus disorder prediction	359	381	-	-
	Seca11g00586	419	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	40	162	IPR031052	GO:0006355
	Seca11g00586	419	MobiDBLite	consensus disorder prediction	364	379	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g00586	Seca-Chr11	5770212	5772447	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca11g00586		FAR1	1.8e-09	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g00586	-		-	mtr:120575977	248.825