Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00576 ATGCCAGATGAAAAGAGCGTGGGAGCACAAGCGTTAGCGATGAGGATATCAGGGGACAAGGCTGCATTCTACAACTGCAAATTCATTGGATTTCAAGATACCTTGTGCGATGACACAGGCAGACATTTCTTCAAGGACTGCTATATCCAAGGCACCTACGATTTCATTTTTGGAAATGGAAAATCATTCTACTTGACAAGTACCATAAAATCAGTTGCCAAGGGTTTGAGTGTGATCACAGCACAGGGTAGGGAAAGCATGACACAAGACACGGGATTCACTTTTGTGCACTGCAACATTACGGGAATTGGTTACATGAACACTTACCTTGGCCGTGCTTGGAAGAGGAGCCCCAGAGTCATTTTTGCCTACACCTATATGGATTCCCTCGTCAATGCCCGAGGATGGTTTACCAACCAACTTCCACAACCCCAACACAATGAGACAGTCTACTATGGAGAATATAGGTGCATGGGACCAGGAGCTACTTCCTCTGGCCGTGTCAAATTTCAAAAGATACTATCTTATGAAGAAGCAAAGCCCTTTTTGAGCATGGCTTATATTCATGGACAAAACTGGCTTCTCCCTCCCCCTAACCTAGCTGTGACACAACAATAA 618 0.4482 MPDEKSVGAQALAMRISGDKAAFYNCKFIGFQDTLCDDTGRHFFKDCYIQGTYDFIFGNGKSFYLTSTIKSVAKGLSVITAQGRESMTQDTGFTFVHCNITGIGYMNTYLGRAWKRSPRVIFAYTYMDSLVNARGWFTNQLPQPQHNETVYYGEYRCMGPGATSSGRVKFQKILSYEEAKPFLSMAYIHGQNWLLPPPNLAVTQQ. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00576 205 Pfam Pectinesterase 9 190 IPR000070 GO:0030599|GO:0042545
Seca11g00576 205 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 7 194 - -
Seca11g00576 205 SUPERFAMILY Pectin lyase-like 7 194 IPR011050 -
Seca11g00576 205 Gene3D - 2 199 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00576 Seca-Chr11 5705330 5706898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00576 2 200 Carbohydrate Esterase AT1G69940 55.779 2.11e-80 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00576 K01051 - gmx:100790786 347.436