Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00561 ATGGCTCTCTCTGCCACAAAAAAACCATTGAGAAGAACACCTACTATCACATTCATCCTCCTGCTAGTACTGTGCACCACCACATCATCGGGTGCTGCTCACACTGATTTCTTGGGATCAGCCTGCCTCAAAGTTTCTCCCGCCAAATTCGTTAACTCTGTCAGTGAAGTTGTTGGTGTTATACGAACGGTTTCATCCATTTTGTCACACTTCAGCAGCGGCTTCGGCAACTTTCGTCTCTCAAACGCCATTATCGACTGTCTCGATTTACTTGACCTGTCCTCTGACGCGCTTTCCTGGTCTATCTCCGCCACTCAGAGTCCCCAAGGGAAGCATAACAGTACGGGGAACCTAAGTTCTGATTTGAGGACGTGGCTGAGTTCTGTACTTGCGAATCCAGAGACGTGCATGGAGGGATTTGAGGGTACAAATAGCATTGTGAAAGGTTTAGTATCAAGTGGTCTTGGCCAAGTGATGTCGTTGGTGAAGGAGCTTCTTGTTCAAGTGGTTCCTGCTGCTGCTGCATCGGATCAATTCTCTACCAGCAAGAGTCAATTTCCTTCATGGATTAAACCAAGGGAGAGGAAGCTGTTACAGGCAAATGGAGTCACTGCGGATGCTGTGGTGGCTGCAGATGGAACTGGAAACTACGCTAAGGTGATGGATGCGGTGCTGGCAGCACCTGACTATAGCATGAAACGCTATGTTATATACATAAAAAAAGGTGTTTATGTGGAGAATGTTGAGATCAAGAAGAAGAAATGGAACATCATGATGATTGGAGAAGGTATGGATGCTACTGTTATCACCGGTAACCGGAGCGTTGTTGATGGATGGACCACATTCCGATCAGCTACCTTTGCTGTCAGTGGCAGGGGTTTCATAGCACGAGACATTTCTTTTCAGAACACTGCAGGACCCGAGAAGCACCAAGCAGTAGCACTGAGATCAGACTCTGACCTCTCTGTATTCTACCGATGTGGGATTTTTGGTTACCAAGACAGCCTATATACTCACACCATGCGCCAATTCTTCAGAGAATGCAAAATCAGTGGCACAGTGGATTTCATCTTTGGAGATGCCACTGCTGTGTTCCAAAACTGCAGAATACTAGCTAGGAAAGGCTTACCAAGTCAAAAGAACACCATCACAGCTCAAGGTCGGAAAGATCAAAATGAACCAACTGGTTTCTCCTTCCAATTCTGCAACATCTCTGCAGATTCTGACCTTCTACCTTCAGTTAGTTCCACTGAAACATACCTTGGAAGACCCTGGAAGACTTATTCAAGAACAGTTTTCATGCAATCATACATGAGTGATGTGATAAGGCCACAAGGGTGGATAGAGTGGAATGGAAATTTTGCTTTGGATACTTTGTACTATGCTGAGTACATGAACTCAGGGCAAGGTGCAGGACTAGCTAACCGAGTGAAATGGTCAGGGTACCATGCATTGAATGATTCTAAGCAAGCTAGTAACTTCACGGTGGCTCAATTTATTGAGGGGAATCTATGGTTACCTTCCACAGGTGTAACATCTTTCTGCAGAACTACCCCATACCCTGAAGCTTGCTTCAATTCATCAAAGCTGACAATCTCAATAACTATAAATCCAAACATCATCAACATCCTTCTTCAGTCCCTCCAAGTAGCAATATCTGAAGCCACAAAACTATCTGATCTATTCAACAATGCTGGATCCTCAAACATCATTGAGAACAAAAGAGGAGCAGTCCAAGACTGTAGAGAACTCCAACAATCCACCTTGACTTCCTTAAAAAGATCAGAATCTGGGGTTCGTTCCCAAAACACAAGGAAGTTAGTTGATGCAAGAGCCTACCTCAGTGCAGCCCTCACCAACAAGAACACATGTCTAGAAAGCTTAGACTCTGCTTCAGGTACCCTGAAGCCAGTTCTAGTGAATTCTGTGATCAACTCTTACAAGCATGTCAGTAATTCTCTTTCAATGCTACCTAAGCCTGAAATGAAGGCTCCCAAAGGACGCAAGAACCGGCGTTTAATGGATGCTCCAACATGGTTGTCAAGCAAAGACCTTCGTTTCTTACAAAGCACTAATGAAGCTCCTGTGCTTGTTGTGGCTACAGATGGAACAGGGAACTTTAGTACCATCACTGAAGCCATCAACTTTGCTCCAAATAACAGCTTTGACAGGACAATAATCTATGTCAAAGAAGGGATATATGAGGAAAATGTGGAAATCCCAAGTTATAAGACAAATATTGTACTGCTTGGAGATGGAAAGGATGTCACTTTCATTACTGGCAATAGAAGTGTCATTGATGGCTGGACCACTTTCAGATCTGCAACTTTAGCGGTATCTGGGGAGGGATTTTTGGCACGTGATATAGCTATTGAGAACAAGGCAGGGCCAGAGAAGCATCAAGCAGTTGCCTTGAGAGTGAATGCAGACTTGACTGCTTTTTACAGGTGTGCCATGTATGGTTTTCAAGACACTGTTTATGTTCACTCCTTTAGACAATTCTATAGAGAGTGTGACATTTTTGGGACCATAGATTTCATATTTGGGAATGCAGCAGTGGTTTTACAGGCATGTAACATAGTGTCTAGAATGCCAATGCCTGGCCAATTCACTGTTATCACTGCACAATCCAGAGATTCCCCTGATGAGGATACTGGCATCTCAATCCAAAACTGTTCAATTTTAGCTACTACTGATTTGTATTCCAGCTCTAGCAGCTTCAAGAGCTACCTTGGGAGGCCATGGAGGGTCTATTCTCGCACTGTTTACCTTCAGTCCTACATTGATATGTTTATTGATCCAACAGGGTGGACAAAATGGAGTGATGATGAAGGCTTGGACACTTTGTATTATGGAGAGTTTGCAAATTATGGGCCTAGTTCAGGGACAGATAAGCGAGTAAAATGGCCTGGGTATCATTTAATGGATTACAATAGTGCCTATAACTTCACAGTCTCAGAGTTCATTATTGAACGGCGAAGAAATGAGAAGAGACAAAAGATGAGGAAGAGGATCCTCATTGGTGTTGTTTCTGCCATTGTCCTCGTTGGTCTTATAGGTTGTGCATTCTTCGTTGTTACCACAAAAAATGGTGATGGTAAAGAGGAGGAGGCTAAGACTTCTCCAACAGCAAAAGCATCTGCAGGTGCTAAGCAAATAACACATTCAGAAAAGTTTGTGAAAATGGTATGCAGCACTGCTGATTATAAAGAAAAATGTGAAGGCCCTCTTAACAAGGCAGTGAAGGATGATCCCAAACTCACACAAACACCAAAAGAGCTTATCAAGCTCTATGTCAAACTTGCTGAGGAAGAGATTAACAAGGCCTTCAACAAAACAGAATCCATGAAGTTTGAATCTGAAAAAGAAAAAGGAGCCTTTGAGGATTGCAAGACATTGTTTGAGGATGCTAAAGATGACTTAGCAACCTCTATCTCTGAACTTGGCAAAATTGAATTCAAGAAACTCTCCACAAAATCTCCTGATTTCAAGAGTTGGCTCAGTGCAGTCATCTCTTTCCAACAAACATGTATTGATGGTTTTCCAGAAGAAGGAAAATTGAGGAATGAACTTCAGAGTATCTTTAAGGACTCCAAGGAATTTGTTAGCAATTCCCTTGCCATTGTGTCTCAAGCTGGTGCTTTCCTTTCAACATTCCAAGCACTTGCACGTGGTCGTCGTTTGTTGCTGTCAGAGGATGCCAACTCCCCACCTGTTGCTACTTTAGATGAAGATGGCTTCCCTGAATGGGTTCATGATGAGGACAGAAGGATGTTGAAGGCTGCAGATAACAGACCTACACCTAATGTCACTGTGGCAAAAGATGGCAGTGGAATATTCAAAACTATCTCTGAAGCTTTAGCAGCCATCCCTCAAAACTATGAAGGACGGTATGTGGTTTATGTTAAGGAAGGAATATATGATGAGACAGTGACAGTTACAAAGAATATGCAAAATTTAACTATGTATGGTGATGGATCTCAAAAGAGCATCATCACTGGTAACAAAAACTTTAGGGATGGAGTCAGGACTTTCCAAACTGCAAGTTTTGTGGTGCTTGGAGAAGGATTTGTGGGGCTAGCAATGGGATTCAGAAACACTGCTGGCCCTGATGGGCATCAAGCAGTGGCTGCTAGAGTGCAAGCAGATCGTGCAGTGTTTGCAAACTGTCGCTTTGAGGGCTACCAAGACACCCTATACACTCAAACCCACAGACAATTCTACCGTAGTTGTATTGTTTCAGGAACAATTGATTTCATCTTTGGTGATGCAGCTGTTGTGTTCCAGAACTGCATCATGATTGTTAGGAAACCAATGGACAACCAGCAGAACATGGTGACTGCTCAAGGGAGAACAGACAAGCAACAAAACACTGGAATTGTTCTGCAAAAATGTACTATCAAAGCTGATGATGCATTCATTCCTGTGAAAGACAAAATCAGGAGCTACCTTGGGAGGCCATGGAAGGAATTCTCAAGAACAATTGTTATGGAATCAGAAATAGGTGATTTCATTCACCCTGATGGGTGGACACCTTGGATGGGTGATTTTGCACTCAATACACTGTATTATGCTGAGTTCAACAACACAGGACCTGGTGCTAGCACCACTAATAGGGTCAAGTGGCCTGGTTACCATGTCATTAACAAGGAGGAGGCTGAACAAGGAGTAGAGATGGCATCAAGAAAAACTTTTAATCAATACATGCTTCTGCCAATCCTGCTAATGAATTGCTTTGTCTTGCTGGGTCATTGTGCTAGGCCTAGGCTGCAGAGCACAGAAGAGGGAGAGGATTTGGTTACTGCAACATGCAAGCACACCCTTTATTTTCAAGTATGTGTTTCTTCCTTAAGATCAGTTCCTAGTAGCAAAACATCAGATCTCAAAATGCTTGCTGAAATTGCTTTAAATCTGAGCAAAACATATGCTACAAAGACATTGTCCTGTGTCTATGAGTTGAAGTCTTCTGCAGCCAATGGTACCAATAGCAGTTACACGTCCCGTTGCTTAAGTGATTGTGAAGAGGAATACTCAGAAGCCATAGATAATTTGCAGGACTCAGAAGAAGCACTTGCTAATGGAGATTATGACAAAGTAGATACATTGGTTTCAGCTGCTATGTCAGATGCTGAGACATGTGAGGATGGCTTCAAAGACATGCTTAGTGATGACAATGGTTCCACCTCTCCTCTTACTGAGCGTAACCGTTACTTCTCTGAATTGTGTAGTAATGCTTTAGCCATTACAAAACTATTAGCTTGA 5262 0.4295 MALSATKKPLRRTPTITFILLLVLCTTTSSGAAHTDFLGSACLKVSPAKFVNSVSEVVGVIRTVSSILSHFSSGFGNFRLSNAIIDCLDLLDLSSDALSWSISATQSPQGKHNSTGNLSSDLRTWLSSVLANPETCMEGFEGTNSIVKGLVSSGLGQVMSLVKELLVQVVPAAAASDQFSTSKSQFPSWIKPRERKLLQANGVTADAVVAADGTGNYAKVMDAVLAAPDYSMKRYVIYIKKGVYVENVEIKKKKWNIMMIGEGMDATVITGNRSVVDGWTTFRSATFAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFFRECKISGTVDFIFGDATAVFQNCRILARKGLPSQKNTITAQGRKDQNEPTGFSFQFCNISADSDLLPSVSSTETYLGRPWKTYSRTVFMQSYMSDVIRPQGWIEWNGNFALDTLYYAEYMNSGQGAGLANRVKWSGYHALNDSKQASNFTVAQFIEGNLWLPSTGVTSFCRTTPYPEACFNSSKLTISITINPNIINILLQSLQVAISEATKLSDLFNNAGSSNIIENKRGAVQDCRELQQSTLTSLKRSESGVRSQNTRKLVDARAYLSAALTNKNTCLESLDSASGTLKPVLVNSVINSYKHVSNSLSMLPKPEMKAPKGRKNRRLMDAPTWLSSKDLRFLQSTNEAPVLVVATDGTGNFSTITEAINFAPNNSFDRTIIYVKEGIYEENVEIPSYKTNIVLLGDGKDVTFITGNRSVIDGWTTFRSATLAVSGEGFLARDIAIENKAGPEKHQAVALRVNADLTAFYRCAMYGFQDTVYVHSFRQFYRECDIFGTIDFIFGNAAVVLQACNIVSRMPMPGQFTVITAQSRDSPDEDTGISIQNCSILATTDLYSSSSSFKSYLGRPWRVYSRTVYLQSYIDMFIDPTGWTKWSDDEGLDTLYYGEFANYGPSSGTDKRVKWPGYHLMDYNSAYNFTVSEFIIERRRNEKRQKMRKRILIGVVSAIVLVGLIGCAFFVVTTKNGDGKEEEAKTSPTAKASAGAKQITHSEKFVKMVCSTADYKEKCEGPLNKAVKDDPKLTQTPKELIKLYVKLAEEEINKAFNKTESMKFESEKEKGAFEDCKTLFEDAKDDLATSISELGKIEFKKLSTKSPDFKSWLSAVISFQQTCIDGFPEEGKLRNELQSIFKDSKEFVSNSLAIVSQAGAFLSTFQALARGRRLLLSEDANSPPVATLDEDGFPEWVHDEDRRMLKAADNRPTPNVTVAKDGSGIFKTISEALAAIPQNYEGRYVVYVKEGIYDETVTVTKNMQNLTMYGDGSQKSIITGNKNFRDGVRTFQTASFVVLGEGFVGLAMGFRNTAGPDGHQAVAARVQADRAVFANCRFEGYQDTLYTQTHRQFYRSCIVSGTIDFIFGDAAVVFQNCIMIVRKPMDNQQNMVTAQGRTDKQQNTGIVLQKCTIKADDAFIPVKDKIRSYLGRPWKEFSRTIVMESEIGDFIHPDGWTPWMGDFALNTLYYAEFNNTGPGASTTNRVKWPGYHVINKEEAEQGVEMASRKTFNQYMLLPILLMNCFVLLGHCARPRLQSTEEGEDLVTATCKHTLYFQVCVSSLRSVPSSKTSDLKMLAEIALNLSKTYATKTLSCVYELKSSAANGTNSSYTSRCLSDCEEEYSEAIDNLQDSEEALANGDYDKVDTLVSAAMSDAETCEDGFKDMLSDDNGSTSPLTERNRYFSELCSNALAITKLLA. 1754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00561 1753 Pfam Plant invertase/pectin methylesterase inhibitor 38 152 IPR006501 GO:0004857
Seca11g00561 1753 Pfam Plant invertase/pectin methylesterase inhibitor 1058 1208 IPR006501 GO:0004857
Seca11g00561 1753 Pfam Plant invertase/pectin methylesterase inhibitor 1598 1748 IPR006501 GO:0004857
Seca11g00561 1753 Pfam Plant invertase/pectin methylesterase inhibitor 511 656 IPR006501 GO:0004857
Seca11g00561 1753 FunFam Pectinesterase 508 659 - -
Seca11g00561 1753 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 161 IPR035513 -
Seca11g00561 1753 SMART PMEI_2 506 656 IPR006501 GO:0004857
Seca11g00561 1753 SMART PMEI_2 1055 1208 IPR006501 GO:0004857
Seca11g00561 1753 SMART PMEI_2 1595 1748 IPR006501 GO:0004857
Seca11g00561 1753 SMART PMEI_2 33 168 IPR006501 GO:0004857
Seca11g00561 1753 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 169 IPR035513 -
Seca11g00561 1753 Gene3D Invertase/pectin methylesterase inhibitor family protein 1056 1212 IPR035513 -
Seca11g00561 1753 ProSitePatterns Pectinesterase signature 1. 231 250 IPR018040 -
Seca11g00561 1753 NCBIfam pectinesterase inhibitor domain 1569 1752 IPR006501 GO:0004857
Seca11g00561 1753 NCBIfam pectinesterase inhibitor domain 509 657 IPR006501 GO:0004857
Seca11g00561 1753 NCBIfam pectinesterase inhibitor domain 1053 1211 IPR006501 GO:0004857
Seca11g00561 1753 Gene3D - 690 1002 IPR012334 -
Seca11g00561 1753 Gene3D - 1264 1568 IPR012334 -
Seca11g00561 1753 Gene3D - 200 511 IPR012334 -
Seca11g00561 1753 FunFam Invertase/pectin methylesterase inhibitor family protein 1595 1753 - -
Seca11g00561 1753 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Seca11g00561 1753 ProSitePatterns Pectinesterase signature 2. 1413 1422 IPR033131 -
Seca11g00561 1753 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 511 657 IPR035513 -
Seca11g00561 1753 Pfam Pectinesterase 206 503 IPR000070 GO:0030599|GO:0042545
Seca11g00561 1753 Pfam Pectinesterase 697 989 IPR000070 GO:0030599|GO:0042545
Seca11g00561 1753 Pfam Pectinesterase 1269 1554 IPR000070 GO:0030599|GO:0042545
Seca11g00561 1753 ProSitePatterns Pectinesterase signature 2. 840 849 IPR033131 -
Seca11g00561 1753 PANTHER PECTINESTERASE 1019 1555 - -
Seca11g00561 1753 SUPERFAMILY Pectin lyase-like 693 990 IPR011050 -
Seca11g00561 1753 Coils Coil 1670 1690 - -
Seca11g00561 1753 CDD PMEI-like_3 1063 1210 - -
Seca11g00561 1753 CDD PMEI-like_4 15 171 - -
Seca11g00561 1753 FunFam Pectinesterase 1263 1566 - -
Seca11g00561 1753 SUPERFAMILY Pectin lyase-like 1266 1554 IPR011050 -
Seca11g00561 1753 Gene3D Invertase/pectin methylesterase inhibitor family protein 1595 1753 IPR035513 -
Seca11g00561 1753 SUPERFAMILY Pectin lyase-like 204 512 IPR011050 -
Seca11g00561 1753 CDD PMEI-like_3 513 656 - -
Seca11g00561 1753 FunFam Pectinesterase 200 517 - -
Seca11g00561 1753 CDD PMEI-like_1 1599 1752 - -
Seca11g00561 1753 Gene3D Invertase/pectin methylesterase inhibitor family protein 512 659 IPR035513 -
Seca11g00561 1753 FunFam Pectinesterase 1056 1213 - -
Seca11g00561 1753 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1598 1752 IPR035513 -
Seca11g00561 1753 FunFam Pectinesterase 690 1000 - -
Seca11g00561 1753 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1058 1211 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00561 Seca-Chr11 5500519 5514968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00561 551 989 Carbohydrate Esterase AT3G43270 45.934 2.31e-126 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00561 - K01051 gmx:100784679 870.922