Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00554 ATGGGCTTCTACGTTGAGGACCCTCTCTCTGGTTTGACAATTGGTCAGGCTATATACGAGGCAGCTCTAATCATTGCAGTTCTCAGATGGATCTTCTGCTTGGTTTTCAGAGTGATCAAAGATAGGAGAAGGACACGCTCAGATGAATCTTCTTCTTCTTCTTCTTGGGAAGAATCTTCTCACATGATGATAAGAGATAATAACCCTCTACCGTTGACCACTTTTGGTGAGATCATGGAGAGGATGCCAGAAACAGAGGACACGTGTGCTATTTGCTTGAACCACCTGAAAATGGAAGATGAGGTTAGGGAACTGATGAATTGTTACCATGTGTTCCATAAGGAATGCATAGATAGATGGTTGGAACATGACCATGACAATGAAACCCATAACCCAACTTGTCCACTATGCAGAGCCCCTTTGTTGAGTTCTTATTGCCTTTCATCAGAGAGCTCAAGCTGTGTACCTCCACCTCAACCTAGCTGGGCTGTGGACAGACTTCTCTATCTCTTTGGGGATGATCTTCTACCTTATTAG 537 0.4395 MGFYVEDPLSGLTIGQAIYEAALIIAVLRWIFCLVFRVIKDRRRTRSDESSSSSSWEESSHMMIRDNNPLPLTTFGEIMERMPETEDTCAICLNHLKMEDEVRELMNCYHVFHKECIDRWLEHDHDNETHNPTCPLCRAPLLSSYCLSSESSSCVPPPQPSWAVDRLLYLFGDDLLPY. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00554 178 PANTHER RING ZINC FINGER PROTEIN-RELATED 23 176 - -
Seca11g00554 178 SMART ring_2 89 137 IPR001841 -
Seca11g00554 178 SUPERFAMILY RING/U-box 83 144 - -
Seca11g00554 178 ProSiteProfiles Zinc finger RING-type profile. 89 138 IPR001841 -
Seca11g00554 178 Pfam Ring finger domain 87 138 IPR001841 -
Seca11g00554 178 SMART ringv_2 88 138 IPR011016 GO:0008270
Seca11g00554 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 145 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00554 Seca-Chr11 5409427 5409963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00554 1 177 C3H Transcription Factor Family AT3G43430 48.066 9.48e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00554 K16281 - gmx:100306203 233.032