Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00551 ATGGCTGGTGGTTTGAACCTCGAGACAGAGCTTTTTGCAGCTTCTCATCCTGTTATGGAGGCTCCTTTTGCTCGTAATAGTAATGTTGATGGAATGAGTAACCGGAAAAGTGTTTGTGATGAAGGCTCCGTGAAGCATTTCTCTGCTAACTGGCCAATGCCAACATCTGGACTGAATGCAGTGACTCCTGGTACAACTCAGTTTGCCATCTGCTATAAGGGGAGTATGTGCGTCTATGATGGAATTCCTGCAAAAACGGTGCGTGAAATAATGTTGATTGCTGCTGCTGCTACCAAGTCTGCTGAAATGAAGAGAGGGATCCCCTTCACTCCACTCATTCCCACAAGCACTCCTTCTCCACAAGGAACCTCTAATAATTTGGCTTCTCAGCAGTCAGGTTGCTTTCCTGTGGAGAAGAGTTCCATGTGCAGGCTGCAAGAATTTCCAATAGCACGCAGACAGTCACTTCAAAGGTTTCTTGAGAAGCGACGAATCAGGTTGGGTAGCAAAGCCCCTTATGCCTCCTCAACAAGAGGACTAGTGGATAACATGGAAAACAACTTCTGTGATGACAATACACCAGATTTTGCTTCCTTCAACGATCAAGGGAGGGGTTTCAGCCATGTATTACTGTCTCTTAAGGGCAATTAG 651 0.4593 MAGGLNLETELFAASHPVMEAPFARNSNVDGMSNRKSVCDEGSVKHFSANWPMPTSGLNAVTPGTTQFAICYKGSMCVYDGIPAKTVREIMLIAAAATKSAEMKRGIPFTPLIPTSTPSPQGTSNNLASQQSGCFPVEKSSMCRLQEFPIARRQSLQRFLEKRRIRLGSKAPYASSTRGLVDNMENNFCDDNTPDFASFNDQGRGFSHVLLSLKGN. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00551 216 Pfam Jas motif 149 173 IPR018467 -
Seca11g00551 216 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 43 178 IPR040390 -
Seca11g00551 216 Pfam tify domain 63 95 IPR010399 -
Seca11g00551 216 SMART tify_2 61 96 IPR010399 -
Seca11g00551 216 ProSiteProfiles Tify domain profile. 61 96 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00551 Seca-Chr11 5385474 5389713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00551 67 176 Tify Gene Family AT5G20900 43.103 3.59e-20 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca11g00551 tify 6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00551 K13464 - gmx:100306655 181.415