Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00540 ATGGGAACATTGGAACAAATTGATGCTCATGAAGCTCAGTCATCATCATCTTCATCTTCTTCCATTGATAGCAACAACCACCCTTCTGGGACACCACCACCATCCTCTTCCTCTTCATCTCTGCCTCTCTGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGTCTCAGCATCTCTCCTTTTTCTCAATCAACATTCAATTCAACACCAAGGGAGGAAAGTTTTGACTGGCCACCAATTAAGTCCACATTGAGGAGCACCCTGATTGAGAAACAAAACCAAAGACCCTCTTTATTTGTCAAAGTCTATATGGAAGGCATCCCCATAGGTAGAAAATTAAATCTGTTGGCACATCACAGCTATGATGGACTTGTAAAAGCTCTTGGCCATATGTTTAGGACCATCATTCTCTGTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCATGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCATGGGCGATGTTCTTGACCAGTGTGAAGAGGCTGAAGATCACAAGAGCTGACAGATGCTAG 570 0.4351 MGTLEQIDAHEAQSSSSSSSSIDSNNHPSGTPPPSSSSSSLPLCRNRTDLSTDLRLGLSISPFSQSTFNSTPREESFDWPPIKSTLRSTLIEKQNQRPSLFVKVYMEGIPIGRKLNLLAHHSYDGLVKALGHMFRTIILCPNSQPLNSGNFHVLTYEDQEGDWMMVGDVPWAMFLTSVKRLKITRADRC. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00540 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 50 187 IPR003311 GO:0005634|GO:0006355
Seca11g00540 189 Gene3D - 93 189 - -
Seca11g00540 189 SUPERFAMILY CAD & PB1 domains 95 183 - -
Seca11g00540 189 MobiDBLite consensus disorder prediction 8 44 - -
Seca11g00540 189 ProSiteProfiles PB1 domain profile. 99 188 IPR000270 GO:0005515
Seca11g00540 189 MobiDBLite consensus disorder prediction 1 44 - -
Seca11g00540 189 Pfam AUX/IAA family 75 185 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00540 Seca-Chr11 5303368 5305787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00540 92 189 B3 DNA Binding Superfamily AT2G46530 33.673 6.43e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Seca11g00540 AUX_IAA 2e-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00540 K14484 - gmx:100527448 290.426