Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00535 ATGGAAGGTGAAGTTGCAATGAAAAAATGGCTGCAAGTTGAGGAAAGGCTAGATGATGATAAAAGTAAAACAGATACACTGAAGGGGATTGAGGAACACTTCAATAAAAATATTCTAGGACCTACTCTTCTCAGTTTGAACTTGAATAACTCAGAGCCTCCCCAAAATCAAGAGCAGCCCCTGACTCAATTGGGTTTGCTGCAAACTAAACTAGAGGAGGCGAGGAAGGAGAATCAGAATTTAAGATCTATGTTAAATCAGATTACTGAACACTATGCAACTCTTCAAAGTCAGCTATTGTTGGTGATGCAGCAGCAGCAACTATGTCCATCACCTAGAAATAATAAAGAATTGCAGAAGGACAAAAGGGAGGATGACATGGAGAAAGCAGTGCTGCCCACTTGGCAGCTGTTAAATAGCCGTGACCCTTCACCTTCAGATGGCAGCATAACAAAAGCATGTGGTTATGCTGAAAACATAGGCAGAAGAAACCTTACATATGCTTACAATAATGTTGAAGTTGAAGGTAAAATCAATAACCAAATAATATCACAGGAAGCAAAAATCATAGAAGATGGAGCATCTGAGGCTTCTTGCAGGAAAGCCAGAGTGTCCATAAGGGCACGGTCAGATTTTTCTTTGATGGGTGATGGGTGTCGATGGAGAAAGTATGGACAAAAGATAGCAAAGGGTAACCCTTGTCCCCGGGCCTACTATCGCTGCAACATGGGAACGGCATGTCCAGTTCGTAAGCAGGTTCAAAGATGTGCAATGGATGAGACCGTTTTCATCACAACCTATGAGGGTAATCATAATCATTCACTCCCAGCAGAAGCCAGATCCATGGCCAGCACAACATCAGCAGCATTAAACATGTTCCTTTCTGGTTCAACAACTAGTACTTTTCATAGCAGCACTCTATCAAACTCTGGCCTCTTCTCTTCCTCTTCATCATCTACTTCTAGTTTGGCTTCCTTCTATCCATCTCCATCATGCCCCACTTTAACATTGGACTTAACCCACCCCTCTAATAACTACTTGAAACTCCAAAGGCCTATTTCTTCAAACCATTGGCAACCATTTCCTGTTTCATTGCATGGTCACAGTACTACTCAAACTCATGAGGGAGGACTGCAGTACCTGTCTTCTAAGCTTCCAACCGTGACACCCTCAGAAAAAAACCTTGCCTTGGTGGATGTTATCAGTGCAGCTATAATGAAGGATCCTTCTATTAAGGTAGTGTTAGATGCAGTAGTTTCCTCACTCAGTGGAGACATCACCCAACTTAGTAGGATCGAGTGA 1302 0.4255 MEGEVAMKKWLQVEERLDDDKSKTDTLKGIEEHFNKNILGPTLLSLNLNNSEPPQNQEQPLTQLGLLQTKLEEARKENQNLRSMLNQITEHYATLQSQLLLVMQQQQLCPSPRNNKELQKDKREDDMEKAVLPTWQLLNSRDPSPSDGSITKACGYAENIGRRNLTYAYNNVEVEGKINNQIISQEAKIIEDGASEASCRKARVSIRARSDFSLMGDGCRWRKYGQKIAKGNPCPRAYYRCNMGTACPVRKQVQRCAMDETVFITTYEGNHNHSLPAEARSMASTTSAALNMFLSGSTTSTFHSSTLSNSGLFSSSSSSTSSLASFYPSPSCPTLTLDLTHPSNNYLKLQRPISSNHWQPFPVSLHGHSTTQTHEGGLQYLSSKLPTVTPSEKNLALVDVISAAIMKDPSIKVVLDAVVSSLSGDITQLSRIE. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00535 433 Pfam WRKY DNA -binding domain 217 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g00535 433 SUPERFAMILY WRKY DNA-binding domain 208 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g00535 433 Coils Coil 64 98 - -
Seca11g00535 433 Gene3D WRKY domain 199 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g00535 433 SMART WRKY_cls 215 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g00535 433 ProSiteProfiles WRKY domain profile. 210 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g00535 433 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 55 424 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00535 Seca-Chr11 5234752 5239879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00535 63 422 WRKY Transcription Factor Family AT1G62300 37.811 3.90e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca11g00535 WRKY 2.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00535 - - gmx:100797109 423.705