Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00525 ATGCTGAATGTTTTGTATATCGATGTTTTTTGTTCTCTCCTTCGTAAATTTTGCAAAGGCTTTAGGTATACATCTCTTTCTTTTTTACCAAAAACTTCTGAAGTTTCTATTTTTTTGTCTTTACCGGAAGATCGATATGACAATATCCCTAGCGATATTGAATCAAAGCTTATGCCATTTCAGCGAGAAGGTGTTAGGTTTCTATTGCAGCATGGATGTCGTGCTCTTTTAGCAGATGAAATGGGACTAGGGAAAACTTTGCAGGCCATTGCTGTAGCTGCATGCGTTCAGGACTCATGGCCTGTTCTCATACTTGCACCATCTTCGTTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTATCTCAAAGTGGTGGATCAAATAAAGGAGGTTTCAATATAGTCTCTTCAAATGCTAAAAGTGGCATTCATCTGGATGGACTATTCAACATCATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTCATGGCGTCCGACTTTAAGGTTGTAATTGCTGATGAATCACACTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCAGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCATTATCCCGACCAATTGAACTATTTAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAGGAATGTTCATGAGTATGGGAATCGGTATTGCAAGGGTGGAATTTTTGGAGTTTATCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATGAAGGCAACGGTGATGATTCGAAGGCTTAAAAAAGACGTTCTTTCTCAACTTCCTGTAAAGCGTAGGCAACAAGTATTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCGTGAGTTGGAGAGGGTAAAAGCCAAAATTAAGGCATCTAACTCAAAAGAGGAGGTTGAATCGCTCAAGTTTACTCAAAAGAATCTGATTAACAAGATATATACTGATTCTGCCGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGGACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAACCAATGATTGATTCAATACATGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGTATTGATGGAAGTACACCTGCTGCATCAAGGCAACAATTGGTTACAGAGTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCAATTAAAGCTGGAGGTGTTGGGTTAACTTTAACTGCTGCCAGCACAGTCATCTTTGCAGAATTGTCTTGGACTCCAGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGTTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGCTAGATGGCCATGAGAAAACCTTAGAGGTCTCATCTAGTCGGCCAGGGAATAGCCCTGCAAAGCGGAAAACTGTTGAACAGTGTCAACCAGGGAATAGCCCTGCAAAGCAGAAGACTCTTGACCAGTTTGTTAGAAGATGTGACAACATGGATGCGTTGGAACATCAGTCCAACCCCAAACGTCCCCGGCACTGA 1695 0.4047 MLNVLYIDVFCSLLRKFCKGFRYTSLSFLPKTSEVSIFLSLPEDRYDNIPSDIESKLMPFQREGVRFLLQHGCRALLADEMGLGKTLQAIAVAACVQDSWPVLILAPSSLRLQWASMIQQWLNIPSSDILIVLSQSGGSNKGGFNIVSSNAKSGIHLDGLFNIISYDLVPKLQNMLMASDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGIFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFRELERVKAKIKASNSKEEVESLKFTQKNLINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGSTPAASRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHEKTLEVSSSRPGNSPAKRKTVEQCQPGNSPAKQKTLDQFVRRCDNMDALEHQSNPKRPRH. 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00525 564 FunFam Chromatin remodeling factor18 33 304 - -
Seca11g00525 564 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 66 238 IPR014001 -
Seca11g00525 564 MobiDBLite consensus disorder prediction 507 540 - -
Seca11g00525 564 SMART ultradead3 53 246 IPR014001 -
Seca11g00525 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 280 IPR027417 -
Seca11g00525 564 Gene3D - 39 286 IPR038718 -
Seca11g00525 564 CDD SF2_C_SNF 353 477 - -
Seca11g00525 564 Coils Coil 299 329 - -
Seca11g00525 564 SMART helicmild6 383 466 IPR001650 -
Seca11g00525 564 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 43 556 - -
Seca11g00525 564 CDD DEXHc_HARP_SMARCAL1 57 280 - -
Seca11g00525 564 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 357 509 IPR001650 -
Seca11g00525 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 511 IPR027417 -
Seca11g00525 564 Gene3D - 301 554 IPR027417 -
Seca11g00525 564 FunFam Chromatin remodeling factor18 315 560 - -
Seca11g00525 564 Pfam Helicase conserved C-terminal domain 367 466 IPR001650 -
Seca11g00525 564 Pfam SNF2-related domain 70 332 IPR000330 GO:0005524|GO:0140658
Seca11g00525 564 MobiDBLite consensus disorder prediction 510 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00525 Seca-Chr11 5165006 5177286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00525 247 493 RAD5 or RAD16-like Gene Family AT1G61140 24.314 6.29e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca11g00525 SNF2_N 6.2e-29 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00525 K14440 - gmx:100778246 920.613