Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00518 ATGGGTGGGGATATCAGTTTGGATGGAGATGTTGCAAGTCTTCAACCAGATGTAGATCCTGAGAGCAAGCAAGATTCAAAGAAGAGCAAGTCAAAAAATGAAGCCACTAACTCATTACCCTTGTACAAGCTTTTCTCATTTGCTGATCCTTTGGATCATTTATTGATGTTTGTGGGGACTGTGGGAGCTACTGGGAATGGAATCTCCATGCCCTTGATGCTTTTAATATTTGGAAATATGATTAATGCATTTGGATCCAAAAACTCCAAAGAAGTTGTTGATGAAGTTTCCAAGGTATCTCTGAAATTTGTATACTTGGCTGTGGGTACCTTTGTTGCAGCACTTTTTCAGTTGACTTGCTGGATGATCACTGGGGAGAGACAGGCTTCAAGAATTAGAGGCTTATATCTTCAAACAATTTTGAGGCAAGATGTGACTTTCTTTGATAAGGAAACTAGTACAGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGCGAGAAGGTGGGACAATTCATACAGTTTTTGGCAACTTTCTTCGGAGGTTTTATCATAGCATTCATTAAGGGATGGCTTCTAACTGTTGTCATGCTATCTTGTATTCCACTTCTCGTCTTGTCTGGTGCTATGTTGAGCTTGTCTATTACAAAAGCATCAGCCAAGGGACAAGTAGCTTATTCTACCGCTGCAAGTGTAGTAGAGCAGACAATAGGTTCTATCCGAACTGTTGTATCATTCACTGGGGAGAAGCGAGCTTTAGCTAAATATAATCAGTCCTTGATCAAAGCTTACAAGACTGGAGTGCAAGAGGCTCTAGCTTCTGGTTTGGGGTTCAGTGCAGTCTTTTTTGTTTTTTACGCCAGTTTTGGTTTGGCAGTATGGTTTGGTGCAAAACTGATAATAGAGAAAGGATATAATGGAGGGGATGTTGTGACTATAATTTTTTCTGTATTGCTTGGTTCCATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGAAATTGATGCTTATGACACTACTGGTCGGCAACTTGATGATATTCGTGGAGATATAGAACTAAGGGACGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTGATATTCAATGGATTTTCTCTTTCAATACCAAGTGGCACTACTGCAGCCTTGGTAGGGCAAAGTGGGAGTGGGAAATCCACAGTTGTTAGCTTGATAGAGAGATTTTATGATCCACAGGCTGGTGAAGTTCTCATCGATGGTATCAACCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAGATAGGCCTGGTTAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAAAATATTGCCTATGGCAAGGATGGTGCAACTGATGAAGAAATCAAAGCTGCAGCAGAACTTGCTAATGCTGCAAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCAGGGGGTCAAAAGCAGAGAGTTGCAATAGCAAGAGCAATTTTGAAAGACCCGAGAATCCTGCTTCTAGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGATAAACCGAACAACTGTCATTGTAGCTCACCGCTTAAGTACTATAAGGAATGCTGATACTATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAAAGGTTCACATGCTGAACTCACCAAGGATCCTGATGGAGCCTATAGCCAACTCATTAGACTGCAAGAAATGAAGGGGTCAGAACAGAATGTTGCAAATGACACAGACAAGCCAGAAAGTATAATACATTCTGGAAGACAATCAAGTCAAAGATCTTTTTCCTTACGATCTATAAGCCGAGGTTCATCTGGAGTTGGAAACAGTAGTCGTCACTCATTCTCAGCATCATATGTTGTACCAACAACAGGTGGAGAAGTTGAAGCTCCTCCATCAACAATTCCTTCACCACCACCAGAAGTGTCACTTTATCGCTTGGCTTCTTTAAACAAGCCTGAGATTCTAGTCTTACTAATGGGGACTATAGCTGCAGTATTACATGGAGTAATAACACCAATTTTTGGGCTCTTACTTTCCAAAATGATAAGTATTTTCTATGAGCCTGCTCATGAGCTTCGTCATGATTCAAAAGTTTGGGCAATAGTATTTGTGGCGCTTGGTGTCGCGGCATTACTCATTATTCCATGTAGATTCTACTTTTTTGGTGTTGCTGGTGGTAAATTGATCAAAAGGATCAGGAACATGTGTTTCGAGAAAGTAGTTCACATGGAAGTGAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGCACTTGGAGCAAGGCTTTCTACTGATGCAGCTTCTATTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTAGTTCAAAATATTGCTACAGCAATAGCTGGCTTGGTAATTGCTTTTGAAGCCAGTTGGCAGCTAGCTTTTATAATCCTTGCTTTGGCTCCTCTATTAGGACTAAATGGATATTTACAATTAAAGCTCTTGAAAGGGTTCAGCGCAGATGCAAAGAAAATGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAGCTATACCAGGAAAAATGTGAGGGACCGATTACAACAGGCATAAGACGAGGGATGATAAGTGGATTTGGTTTTGGGTTATCATTCTTCTTGCTGTACGCAGTTTATGCATGCAGTTTTTATGCTGGAGCTCGTCTTGTAGAGGATGGAAAAACAACAATGACAGATGTTTTCCGTGTCTTTTTTGCTCTGAGCATGGCAGCTATGGGAATCTCTCATTCCGGGTCCTTGGTCCCTGATTCATCAAATGCAAAAGGTGCTGCTGCTTCCATATTTGCTATTCTTGATCGGAAGTCACTAATAGACCCCAGTGATGAATCTGGAATCACATTGGAAGAAGTCAAGGGAGAAATTGAGCTTAAACATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGACCATTCATAGTGGCAAGTATATTGGCAAAAATCAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGCAAATCAACAGTGATCTCATTATTACAAAGATTTTATGACCCAGACTCAGGTCACATTACACTGGATGGAAAAGAAATTCAAAGGCTACAAGTGAAATGGCTAAGACAACAGATGGGCCTGGTAAGCCAAGAGCCCGTGCTGTTTAACGACACCATCCGAGCCAATATTGCATATGGAAAAGAAGGAGATGCAACAGAAGCAGAAATTATAGCTGCAGCAGAACTGGCAAATGCTCACCAGTTCATTAGTAGTCTGCAAAAGGGTTATGACACAATAGTAGGGGAACGAGGAGTTCAATTATCTGGGGGACAGAAGCAACGGGTGGCAATTGCACGAGCTATAGTGAAGAATCCAAAAATATTACTACTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTTGACCGTATTATGGTCGACCGAACCACAATAGTAGTGGCTCATAGGTTATCGACCATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGGGTCATAGCAGAGAAGGGAAAGCATGAAGCATTACTCCATAAGGGAGGTCACTATGCTTCCTTAGTAGCATTGCACACTAGTGCTTCTTCATTGTAG 3849 0.4147 MGGDISLDGDVASLQPDVDPESKQDSKKSKSKNEATNSLPLYKLFSFADPLDHLLMFVGTVGATGNGISMPLMLLIFGNMINAFGSKNSKEVVDEVSKVSLKFVYLAVGTFVAALFQLTCWMITGERQASRIRGLYLQTILRQDVTFFDKETSTGEVVGRMSGDTVLIQDAMGEKVGQFIQFLATFFGGFIIAFIKGWLLTVVMLSCIPLLVLSGAMLSLSITKASAKGQVAYSTAASVVEQTIGSIRTVVSFTGEKRALAKYNQSLIKAYKTGVQEALASGLGFSAVFFVFYASFGLAVWFGAKLIIEKGYNGGDVVTIIFSVLLGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRQLDDIRGDIELRDVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIKAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVEKGSHAELTKDPDGAYSQLIRLQEMKGSEQNVANDTDKPESIIHSGRQSSQRSFSLRSISRGSSGVGNSSRHSFSASYVVPTTGGEVEAPPSTIPSPPPEVSLYRLASLNKPEILVLLMGTIAAVLHGVITPIFGLLLSKMISIFYEPAHELRHDSKVWAIVFVALGVAALLIIPCRFYFFGVAGGKLIKRIRNMCFEKVVHMEVSWFDEAEHSSGALGARLSTDAASIRALVGDALGLLVQNIATAIAGLVIAFEASWQLAFIILALAPLLGLNGYLQLKLLKGFSADAKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKCEGPITTGIRRGMISGFGFGLSFFLLYAVYACSFYAGARLVEDGKTTMTDVFRVFFALSMAAMGISHSGSLVPDSSNAKGAAASIFAILDRKSLIDPSDESGITLEEVKGEIELKHVSFKYPTRPDVQIFRDLCLTIHSGKYIGKNQTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIQRLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGDATEAEIIAAAELANAHQFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRIMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLHKGGHYASLVALHTSASSL. 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00518 1282 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 339 - -
Seca11g00518 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 614 IPR003439 GO:0005524
Seca11g00518 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 343 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca11g00518 1282 ProSitePatterns ABC transporters family signature. 1178 1192 IPR017871 GO:0005524|GO:0016887
Seca11g00518 1282 Pfam ABC transporter 1063 1206 IPR003439 GO:0005524
Seca11g00518 1282 FunFam ABC transporter B family member 1 690 998 - -
Seca11g00518 1282 MobiDBLite consensus disorder prediction 1 34 - -
Seca11g00518 1282 FunFam ABC transporter B family member 1 368 617 - -
Seca11g00518 1282 Gene3D ABC transporter type 1, transmembrane domain 101 1002 IPR036640 GO:0005524|GO:0016020
Seca11g00518 1282 Pfam ABC transporter transmembrane region 56 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca11g00518 1282 Pfam ABC transporter transmembrane region 710 982 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca11g00518 1282 ProSitePatterns ABC transporters family signature. 517 531 IPR017871 GO:0005524|GO:0016887
Seca11g00518 1282 MobiDBLite consensus disorder prediction 621 666 - -
Seca11g00518 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1021 1275 IPR027417 -
Seca11g00518 1282 SUPERFAMILY ABC transporter transmembrane region 698 1016 IPR036640 GO:0005524|GO:0016020
Seca11g00518 1282 FunFam ABC transporter B family member 1 1022 1277 - -
Seca11g00518 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1032 1275 IPR003439 GO:0005524
Seca11g00518 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 711 997 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca11g00518 1282 FunFam ABC transporter B family member 9 43 374 - -
Seca11g00518 1282 SMART AAA_5 405 591 IPR003593 GO:0016887
Seca11g00518 1282 SMART AAA_5 1065 1258 IPR003593 GO:0016887
Seca11g00518 1282 CDD ABC_MTABC3_MDL1_MDL2 378 616 - -
Seca11g00518 1282 FunFam ABC transporter B family member 9 999 1021 - -
Seca11g00518 1282 SUPERFAMILY ABC transporter transmembrane region 43 362 IPR036640 GO:0005524|GO:0016020
Seca11g00518 1282 CDD ABC_MTABC3_MDL1_MDL2 1032 1273 - -
Seca11g00518 1282 PANTHER ABC TRANSPORTER B FAMILY 20 619 IPR039421 -
Seca11g00518 1282 Gene3D - 1022 1281 IPR027417 -
Seca11g00518 1282 CDD ABC_6TM_Pgp_ABCB1_D2_like 700 1015 - -
Seca11g00518 1282 Pfam ABC transporter 397 545 IPR003439 GO:0005524
Seca11g00518 1282 Gene3D - 376 629 IPR027417 -
Seca11g00518 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 616 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00518 Seca-Chr11 5073238 5079081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00518 13 622 Calmodulin-binding Proteins AT2G36910 36.731 1.14e-112 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00518 K05658 - gmx:100800293 1989.93