LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g00504	ATGGCATCTGATCTGAATTCGGGGTTGTCAAGGAAAACATTTGTTTTTGGGTTGAAAGCATGGGAATTAATGGGGATAATAGTTGGGTTGTTCATTGTAATCATTCTTATAGTGCTATCTATATGTCTTACTTCAAGAAAGAAATCCAGAAGAGTCAATGGCATGCTTCCCCTCAGCCATATGTTATCTGTTTCAGAAGAGATCAAAGAGATTAGAGTTGATCAAGTTTCATCAAATAATCATCCCCAAAATGGTGCATTTATGAGTCTGTACGACAAGTTTAGTGACAGGGAGTCTGAAAAGGTTTTGATCCAAACAAAGAATGGGGAAAATAGCAGTCAATCAGGCTCATTTATTCAGGTTGAGAAAGATGCTGCTGGCTCTCAGTCGGGTGAAGAAAGTGGTGCCAAGTCTGTTTCTATCTACCGGTCTTCTTCGCATCCTATAACTGCTCCATCCCCTTTATCTGGTCTTCCTGAATTCTCTCATCTTGGCTGGGGGCACTGGTTTACATTGAGAGACCTAGAACTTGCTACAAACAGGTTTTCAAAAGACAATGTTATTGGTGAAGGTGGATATGGAGTTGTTTATCAAGGCCAGCTAATCAATGGGAGTCCTGTGGCTGTCAAGAAGTTGCTCAATAATCTAGGACAAGCTGAAAAGGAATTTAGAGTGGAAGTTGAGGCTATTGGTCATGTGAGGCACAAGAACTTGGTTAGGCTTTTGGGCTATTGCATTGAAGGCACTCACAGGTTGTTGGTTTATGAGTATGTCAACAATGGCAATTTAGAGCAATGGCTTCATGGAGCCATGAGGCAGCATGGTTTTCTTACATGGGATGCTCGGATTAAAATTCTTCTTGGAACAGCTAAAGCGTTGGCTTACTTGCACGAGGCAATTGAGCCAAAAGTTGTCCATCGAGATATTAAGTCAAGCAATATCCTAATTGATGATGACTTCAATGCCAAAATATCTGACTTTGGGCTGGCTAAGTTACTGGGTGCTGGAAAAAGTCACATTACAACTCGAGTAATGGGTACTTTCGGATATGTGGCTCCAGAATATGCCAATTCTGGCTTACTAAACGAGAAGAGTGATGTTTATAGCTTTGGGGTATTGCTCCTTGAAGCAATTACTGGAAGAGACCCTGTGGATTATAGCCGACCCGCAGCTGAGGTAAATTTGGTTGACTGGCTCAAGATGATGGTAGGGAATAGGCGTGCAGAAGAGGTGGTTGATCCTAACATTGAAACCAGACCATCAACAAGTGCCCTTAAAAGAGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAAAAAAGACCAAAGATGAGTCAAGTTGTCCGCATGCTTGAATCCGAAGAATATCCCATACCTCGAGAGGATCGAAGACGCAGAAGGAGTCAGACAGGAAATGCAGAGGTGGAAGCCCAGAAAGAGGCTTCTGATACAGAGAAGAGTGACAATCCAGATTCTAAGTCCAATGGCCGAAGGAACCATCGGAAGTAG	1515	0.4271	MASDLNSGLSRKTFVFGLKAWELMGIIVGLFIVIILIVLSICLTSRKKSRRVNGMLPLSHMLSVSEEIKEIRVDQVSSNNHPQNGAFMSLYDKFSDRESEKVLIQTKNGENSSQSGSFIQVEKDAAGSQSGEESGAKSVSIYRSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYQGQLINGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQHGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGNRRAEEVVDPNIETRPSTSALKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRRSQTGNAEVEAQKEASDTEKSDNPDSKSNGRRNHRK.	505

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca11g00504	504	Pfam	Protein kinase domain	183	451	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca11g00504	504	ProSiteProfiles	Protein kinase domain profile.	182	459	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca11g00504	504	PANTHER	OS01G0323000 PROTEIN	4	484	-	-
Seca11g00504	504	CDD	STKc_IRAK	188	454	-	-
Seca11g00504	504	MobiDBLite	consensus disorder prediction	440	504	-	-
Seca11g00504	504	Gene3D	Phosphorylase Kinase; domain 1	164	257	-	-
Seca11g00504	504	Gene3D	Transferase(Phosphotransferase) domain 1	258	469	-	-
Seca11g00504	504	ProSitePatterns	Protein kinases ATP-binding region signature.	188	211	IPR017441	GO:0005524
Seca11g00504	504	MobiDBLite	consensus disorder prediction	106	124	-	-
Seca11g00504	504	FunFam	Putative receptor-like protein kinase	164	257	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g00504	Seca-Chr11	4960880	4965528	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g00504	17	456	Trihelix Transcription Factor Family	AT1G70460	39.775	3.49e-95	301

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-V	Seca11g00504		Pkinase	2.7e-49	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g00504	-		-	gmx:100793499	897.501

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