Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00502 ATGGGTTGCTTTGGCTTTTGCAAAGAAAATGATGCTTATACACCTTCTGACAAAGGACACTTCATCCAAACCAATCCTACTGCAGGGAACACTGGTTATCAAGGCAGACACACAACAATAATCACTCCACAAACTATAAACTTTCAACCTATTTCTGTTCCTTCCCTTACAGTAGATGAATTGAAGTCTTTGACAGATAATTTTGGTTCAAAATCTTTCATTGGCGAGGGTGCATATGGGAAAGTATATCATGTCATATTGAAAAATGGGCGTGAAGTGGCAATTAAAAAGTTAGATGCTAGTAAGCAGCCAGAGCAGGAATTTCTTTCTCAGGTCTCCATTGTATCAAGGCTCAAGCATGAAAACGTTCTTGAGCTTGTTTCTTATAGCGTTGATGGTCCTTTGCGTGCCCTTGCCTATGAGTATGCTCCTAATGGATCCCTTCATGATATTCTACACGGACGCAAAGGTGTCAAGGGTGCACAACCTGGTATAGTTCTCTCATGGGCTCAGAGAGTTAAAATTGCTGTTGGCGCAGCCAGAGGACTTGAATATCTTCATGAAAAGGCAGAGACTCATATTATCCATCGTTACATTAAGTCTAGTAACATAATGCTTTTTGATGATGATGTTGCAAAGATTGCTGATTTTGATTTGTCAAATCAAGCCCCTGATGCAGCAGCACGTCTTCATTCTACCCGTGTTCTTGGAACCTTTGGTTATCATGCTCCAGAATATGCAATGACTGGGCAGCTCACTTCAAAAAGTGATGTTTATAGTTTTGGAGTTATATTGCTGGAACTCTTAACTGGGCGTAAACCTGTTGATCATACACTGCCTCGAGGACAACAAAGCCTTGTGACTTGGGCAACACCAAAGCTTAGTGAAGATAAGGTAAAGCAGTGTGTTGATGTTAGATTAAAGGGAGAGTACCCTTCAAAGTCAGTTGCAAAGATGGCTGCTGTTGCTGCATTGTGTGTACAATATGAAGCTGAGTTTCGGCCAAATATGAGCATCATAGTCAAAGCTCTACAGCCTCTACTCAATGCTCGTCCAAAGGAAGCACGGAACATGTAG 1077 0.415 MGCFGFCKENDAYTPSDKGHFIQTNPTAGNTGYQGRHTTIITPQTINFQPISVPSLTVDELKSLTDNFGSKSFIGEGAYGKVYHVILKNGREVAIKKLDASKQPEQEFLSQVSIVSRLKHENVLELVSYSVDGPLRALAYEYAPNGSLHDILHGRKGVKGAQPGIVLSWAQRVKIAVGAARGLEYLHEKAETHIIHRYIKSSNIMLFDDDVAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGQLTSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDVRLKGEYPSKSVAKMAAVAALCVQYEAEFRPNMSIIVKALQPLLNARPKEARNM. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00502 358 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Seca11g00502 358 PIRSF ILK 14 356 - -
Seca11g00502 358 SUPERFAMILY Protein kinase-like (PK-like) 43 344 IPR011009 -
Seca11g00502 358 Pfam Protein tyrosine and serine/threonine kinase 73 344 IPR001245 GO:0004672|GO:0006468
Seca11g00502 358 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 20 353 - -
Seca11g00502 358 Gene3D Phosphorylase Kinase; domain 1 33 142 - -
Seca11g00502 358 ProSiteProfiles Protein kinase domain profile. 68 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00502 358 FunFam pto-interacting protein 1 144 355 - -
Seca11g00502 358 CDD STKc_IRAK 74 347 - -
Seca11g00502 358 Gene3D Transferase(Phosphotransferase) domain 1 143 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00502 Seca-Chr11 4954904 4958526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00502 49 345 Receptor kinase-like Gene Family AT4G02010 49.834 3.20e-89 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Seca11g00502 PK_Tyr_Ser-Thr 8.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00502 K13436 - gmx:547596 617.846