Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00500 ATGGAGGCCAAATTTGGGGGAAAGAATCAGTATTTGTTTGGACCTGTGGTGTCTGAAATGAAGGGTGTTGGGAATGGGAAGAGAAGTTTGGAATGGGATTTGAATGACTGGAAATGGGATGGTGATCTTTTCACTGCTCATCCACTCAATTCAGTTCCATCAGATTGTAGGAGTCGCCAGTTTTTCCCACCTCATCCTGAAATTCCTGCAAAAATTGCTAATTTATCTACCAAGGAAGGAAGGAGGGAATTGGAGAAAAGGAGGAGGGGTGTTATAGGTGAAGGTGAAGGGGAAAGGGAGGAGCTGAATGATGAAGATGGTTCTTCTCTTAATTTGAACCTGGGGGGTCAAGTTTACCCTGTCATGGTGGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGGTAATTGAGACTACTACTACTACTACTACCTCTAACCGTGCTGTGTGTCAGGTGCAAGATTGTAGGGCTGATCTTAGTAATGCTAAGGATTACCACCGTCGCCACAAGGTTTGTGAGCTGCATTCTAAAGCCACTAAGGCATTAGTGGGAAATGTTATGCAGCGTTTCTGCCAACAGTGTAGCAGGTTTCATATTCTTCAAGAGTTTGACGAAGGGAAGAGAAGTTGTCGTAGGCGTCTGGCTGGCCACAATAGGAGGAGGAGGAAAACTCATCCCGATGCTGTAGTTAATGGAGGCTCCCTGAACGATGAAAGGGGCAGTAGCTATCTGTTAATGAGTCTGATACGGATACTGTCCAATATGCATTCAAATAGTTCAGATCATACAAGGAACCATGATATTCTCTCTCATCTGCTGAGGAACCTGGCAAGTCTGGCCGGTACAATTAATGGAAGAAGTTTAGCCTCCTTATTGGAGGGATCTCAAGGTTTGGTAAATGGTGGGACACCTGGAACTGCGAATAATGTGCCTAGCCTTAATTCAAATGATCCTGAAGTTTCCAGACCCTCTGGTTCTTCCATCAAGACGGATAATGGCTTCATAGGTCAGGACCCTCCAAAGTCTGCGGTGCAGTGTGAGACCTTGCCTGCTTATGGTATGACACAAAAATGTATACCTTCAGGCAATGATGGAGTGGGAAATATAAAACCTCCTCCAGGACCACAATCCTCAAGTTTACTTCAATCAAGGGACAGCCTTCCATCCCAATTAATTGCTGGAGTTGGAAGGGACAACTTAAATAACATTGACCTGAATAATGTATACAATGACATGCAGAATAGCATTGAGAATCCTAAGAAGTCTTATCCTCCTTTGGCTTCTGAGATTGGGTCTATTGATCATCCTTCATGGTTGCGGTGTGACTCTCTCAAATCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACCCAATCACCATCTAGTTCCAGTGGTGAAGCTCAGGGTCGCACAGATCGAATAGTTTTCAAACTCTTTGGCAAGGATCCAAATGATTTTCCCCTTGTTTTACGATCACAGATACTCAATTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGACCTGGATGTATCATATTAACAATATATCTTCGTCTAGAAAAATCTACATGGGAGGAGCTCTGCTGTAATCTAGGATCCAGCTTGAAAAAGCTTCTTGCTACATCAAATGATTCTTTTTGGAGAACTGGATGGATATATACAAGGGTGCAGCACTCTGTAGCTTTTCTGTATAATGGTTTGTTCTCCCTTACTGTGTGTGTGGTCTTGGTTACTCTAAATTGTTTTTCTATTTCATGCATCTCTCCTGCAGGTCAGGTAGTCTTAGATGTGCCCTTGCGTCTCAAAAGCCCACAAAATTGCAGGATTTCATGTATTAAACCACTTGCTGTTCCTGCAAATGCACGTGCTCAATTTCTTGTGAAAGGATTCAACCTTTTGCGGTCCAGCACAAGGTTGCACTGTGCACTTGAAGGGAAGTATCTGGTCCATGACAGTTGTCATGCTTTGATTGATGGAGCTGATGCAGCCATTCATCATCTCAGCTTCTCTTGCCATATACCAACTGTGTCTGGGAGGGGGTTTATTGAGGTGGAAGATCATGGTCTTAGCAGCTGTTCCTTTCCATTTATAGTTGCAGAGCAAGAAGTTTGTTCAGAGATCTGTGAGCTGGAGAATGTGATTGAGGCAGCTGAGGCCACTGAAGACATCCAGATAAAAAGTCAACAAATGGAGGAAAAGACTCGAGCTTTGGATTTCTTACAAGAAATTGGTTGGCTCCTTCATAGACGTCATGTGAATGTTAGGCTAGGTCCCATGGCACCTACCCATGATCTCTTCCATTTCAATCGGTTCATGTGGCTTGTTGACTTCTCCATGGACCATGGTTGGTGTGCTGTGATGAAAAAACTCTTGGATATTATATTTGAGGGTGGTGTTGATGTAGGAAAGCACACCTCCATTGAGCTTGCATTGTTAGACATGAGTCTTCTACACAAAGCTGTAAAGAGAAATTGTAGGCCTATGGTGGAACTACTGTTAAAATTTGTGCCAGTTAATACTTCAGATGGTGCAGACAGTGAAATGAAACAAGTTGACAGGACTGGTGACAGATTCTTATTTAGACCTGATACTGTTGGACCTGCTGGGTTGACTCCTCTTCATGTTGCAGCAAGTATGAATGGCTCGGAAAGTGTGTTGGATGCATTGACTGATGATCCGGGAATGGTTGGAATTGAAGCATGGAGAAGTGCCCGGGACAATACAGGTTTGACACCAAATGACTATGCATGCCTCCGGGGCTACTATTCCTACATTCAACTTGTCCAGAAGAAGAGCAGCAAAAGAAGTGGAGGACAACAACATGTGGTTGATATCCCTGGCACCCTTGTAGATAGTAACACAAAGCAGAAGCAATCAGATGGGCACAGGACATCTAAAGTTTCCTGTTTGCAGATTGAGAAGAAGATTGAAACTAATGCAGTGCCACGCCAATGTGGGATATGCCAGCACAAGCTGGCTTATGGTGGCATGAAAACAGCAGTGGTTTATAGGCCAGTCATGCTCTCAATGGTGACCATAGCAGCTGTCTGTGTCTGTGTAGCCTTGCTCTTCAAAAGCTCACCAAGAGTTTATTATGTGTTCCAGCCTTTCAACTGGGAATCATTGGAATACGGTTCAATCTAA 3162 0.4374 MEAKFGGKNQYLFGPVVSEMKGVGNGKRSLEWDLNDWKWDGDLFTAHPLNSVPSDCRSRQFFPPHPEIPAKIANLSTKEGRRELEKRRRGVIGEGEGEREELNDEDGSSLNLNLGGQVYPVMVEGEEKSGKKTKVIETTTTTTTSNRAVCQVQDCRADLSNAKDYHRRHKVCELHSKATKALVGNVMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNRRRRKTHPDAVVNGGSLNDERGSSYLLMSLIRILSNMHSNSSDHTRNHDILSHLLRNLASLAGTINGRSLASLLEGSQGLVNGGTPGTANNVPSLNSNDPEVSRPSGSSIKTDNGFIGQDPPKSAVQCETLPAYGMTQKCIPSGNDGVGNIKPPPGPQSSSLLQSRDSLPSQLIAGVGRDNLNNIDLNNVYNDMQNSIENPKKSYPPLASEIGSIDHPSWLRCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQGRTDRIVFKLFGKDPNDFPLVLRSQILNWLSHSPTEIESYIRPGCIILTIYLRLEKSTWEELCCNLGSSLKKLLATSNDSFWRTGWIYTRVQHSVAFLYNGLFSLTVCVVLVTLNCFSISCISPAGQVVLDVPLRLKSPQNCRISCIKPLAVPANARAQFLVKGFNLLRSSTRLHCALEGKYLVHDSCHALIDGADAAIHHLSFSCHIPTVSGRGFIEVEDHGLSSCSFPFIVAEQEVCSEICELENVIEAAEATEDIQIKSQQMEEKTRALDFLQEIGWLLHRRHVNVRLGPMAPTHDLFHFNRFMWLVDFSMDHGWCAVMKKLLDIIFEGGVDVGKHTSIELALLDMSLLHKAVKRNCRPMVELLLKFVPVNTSDGADSEMKQVDRTGDRFLFRPDTVGPAGLTPLHVAASMNGSESVLDALTDDPGMVGIEAWRSARDNTGLTPNDYACLRGYYSYIQLVQKKSSKRSGGQQHVVDIPGTLVDSNTKQKQSDGHRTSKVSCLQIEKKIETNAVPRQCGICQHKLAYGGMKTAVVYRPVMLSMVTIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGSI. 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00500 1053 Pfam SBP domain 150 223 IPR004333 GO:0003677
Seca11g00500 1053 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 595 933 IPR044817 GO:0003677
Seca11g00500 1053 FunFam Squamosa promoter-binding-like protein 14 141 211 - -
Seca11g00500 1053 SUPERFAMILY Ankyrin repeat 787 936 IPR036770 -
Seca11g00500 1053 MobiDBLite consensus disorder prediction 441 471 - -
Seca11g00500 1053 MobiDBLite consensus disorder prediction 443 471 - -
Seca11g00500 1053 MobiDBLite consensus disorder prediction 363 383 - -
Seca11g00500 1053 Gene3D - 752 939 IPR036770 -
Seca11g00500 1053 MobiDBLite consensus disorder prediction 300 333 - -
Seca11g00500 1053 MobiDBLite consensus disorder prediction 300 340 - -
Seca11g00500 1053 MobiDBLite consensus disorder prediction 85 109 - -
Seca11g00500 1053 Gene3D - 141 211 IPR036893 GO:0003677|GO:0005634
Seca11g00500 1053 Coils Coil 722 742 - -
Seca11g00500 1053 ProSiteProfiles Zinc finger SBP-type profile. 147 224 IPR004333 GO:0003677
Seca11g00500 1053 SUPERFAMILY SBT domain 148 229 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00500 Seca-Chr11 4909855 4917415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00500 25 1052 SBP-box Gene Family AT3G60030 45.351 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca11g00500 SBP 9.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00500 - - gsj:114419913 1575.07