Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00488 ATGTTAAGTGGTTTGTTGTTCTATTATGCCATGCTTCACACTTTACAGGGCTGCAAGTCTGGCATCTCACATTTGCCTGTAGTTCCAGTAACCCTAGTTGGTAGCTCTCGAATTAGTTCAGCGCCTTCCTCTACCAAAACAAACTCACCAATATCTGTTGTTCAAACTTCTTTGAGATCAAATGCAAATAAAGTTGATCAGAATAAGGATGTCAACTCACACAATGATCCTAGAGCCTCTTCTCATGCTCAACCTATCAGCAATTCCATACCTCACAGTGCACCTCAGCTTGCACATGAAGCCACTGGGTTTTCTGAGTTATTGAGGAACCCCGTTATTTCATCATGGACACCTTCTCTCCCTACCTTTTCTCTTGGAACTGGCTTGTCTCCCTGGGCATTAATTCAGAACTCTAGCAGAAATACCGATAATATGTATGATAAAGAACTTCATGTTGAAGGATCCATTGAAGGTCCTGAGGCAGACTTCACTGTTCATAAACTATGCGATGCAAGGTTAGATGCAGTTCGTGGAATGCAAGATGGTATAATTTTCAGAGATAAGCTCATCACTGACATGTATATCCAGCCAGTTACAAGAGTTTCACAGACTGTTAATCAGGTGCAGAAGGAGCATGATTTAGGTTCACTTCACACACAATTACATGATCATACTGATCATCCAGTTGTTGCAACTACTACAATCCTAGTTAAAGATGATGGTAATGACAAAGGTGAGTCAGAACAAGTTGAATCTGGGGGATTGAAGAAGCTCGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGTGGAGACTATGATAATTCCTTGATGGCTTCAGATTCTGGCAATTATTGGGGTACACTCGATGCTCATAATGAGGATAAGGAGGTGTCTAGTTTACGCCACATGCAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCCCAAGAGCAATTATTCAGTATCCATGACTTTTCTCCGGATTGGGCATATTCTGGGATTAGAACAAAGGTTTTAATAGTTGGTACATTTCTGGGGAGTAAAAAGCTTTCGAGTGAGACCAAATGGGGATGCATGTTTGGTGAAATAGAGGTTTCTGCTGAAGTTTTGACAGAGAATGTCATACGGTGTCAGACTCCTTTGCATTCACCTGGCCGCATTCCATTCTATGTTACCTGCAGTAATAGGTTAGCCTGCAGCGAGGTCAGAGAATTTGAATATCATGAAAATCCTACTAAATTTATAAGTTCTGTGGGTATTAAAGTCTCACCAGAAGATGAGGTACAACTTCAATTGCGACTTCTTAAACTAGTAGAATTGGGACCTGACAAGAAGTTGTTGAAGTGCTCTTATCCTGAATGTGAGAGATGTAAACTTAAGGGAACAATGTATTCCATGAGAGATGATAGTGGCGTATTTGAAGAAACTTTTCAGATTAATAGAAGTGATCAGATAAACCCTAGAGATGTATTATTTCAGAGATTAATCAGAGACAAGCTTTATGAATGGTTGGTGTTTAAGGTTCATGAAGAAGAAAAAGGACTACATGTGTTGGATAATGAAGGCCAAGGAGTAATTCATTTGGCAGCTTCTCTTGGTTATGTGTGGGCTTTGGGCCCATTAGTTGCTGCTGGTATCAGTCCTAACTTCAGAGATGCACATGGAAGAACAGGACTTCACTGGGCATCATACTTTGGGAGAGAAGAAACTGTGATTGCGCTAGTCAAATTAGGTGCAGCCCCAGGTGCTGTTGAGGATCCCACATCAGCATTTCCTCGAGGAAAAACAGCAGCTGATTTAGCTTCAAGAAGAGGACATAAAGGCATTGCTGGGTATTTGGCTGAGTCAGATCTAACAAGTCAGTTATCTATATTGACTGTAAATGAAAATGATATGTACAGCATTGCCACAACCACAGCAGCTGACAGTGCTTTTGAGGCTGCTGAAGGTGACTCATCTAATATGACAATGGATGAGCAACACTGTCTGAAGCAGTCACTTGCTGCTTTTCGAAAATCAGCTCATGCAGCTGCTTCAATCCAAGCAGTCTTTAGAGCAAGATCATTCTGTCAGAGACAATTAGCCAAAGGCAGCAGTGATATTTCTGAAACAGTACATGACCTAGTTGCTGATTCTATGAACAAGGTTCAGAAGATGGGTCACTTTGAGGATTATTTACATTTTGCTGCTTTAAGGATTCAAAAGAGATATCGTGGGTGGAAAGGAAGAAAAGATTTTTTGAAAATACGCAACCGCATAGTAAAAATTCAGGCTCATTTTAGAGGGCACCGAGTTCGGAAGCAGTACAAAAAAGTTGTCTGGTCTGTTAGCGTTGTGGAAAAGGCAATACTGCGTTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCGGGTTGGGCAGCCTGTTGGCATTGTGGCAAAAGATGCTGAGAAAAGTGATGAGTATGATTTTCTTAGCATTGGGCGGAGACAGAAATCAGATGATGTAAAGAAAGCTCTGGATAGAGTTAAGTCCATGGTTCGTAACCCAGAGGCACGGGATCAATATATGAGGCTCATCAAGAAGTATCAGAATTTTAAGATTGATGATGGCAGAAGCAGTCAATTGCAGCATGTTGATTAG 2625 0.4137 MLSGLLFYYAMLHTLQGCKSGISHLPVVPVTLVGSSRISSAPSSTKTNSPISVVQTSLRSNANKVDQNKDVNSHNDPRASSHAQPISNSIPHSAPQLAHEATGFSELLRNPVISSWTPSLPTFSLGTGLSPWALIQNSSRNTDNMYDKELHVEGSIEGPEADFTVHKLCDARLDAVRGMQDGIIFRDKLITDMYIQPVTRVSQTVNQVQKEHDLGSLHTQLHDHTDHPVVATTTILVKDDGNDKGESEQVESGGLKKLDSFGRWMDKEIGGDYDNSLMASDSGNYWGTLDAHNEDKEVSSLRHMQLDMDSLGPSLSQEQLFSIHDFSPDWAYSGIRTKVLIVGTFLGSKKLSSETKWGCMFGEIEVSAEVLTENVIRCQTPLHSPGRIPFYVTCSNRLACSEVREFEYHENPTKFISSVGIKVSPEDEVQLQLRLLKLVELGPDKKLLKCSYPECERCKLKGTMYSMRDDSGVFEETFQINRSDQINPRDVLFQRLIRDKLYEWLVFKVHEEEKGLHVLDNEGQGVIHLAASLGYVWALGPLVAAGISPNFRDAHGRTGLHWASYFGREETVIALVKLGAAPGAVEDPTSAFPRGKTAADLASRRGHKGIAGYLAESDLTSQLSILTVNENDMYSIATTTAADSAFEAAEGDSSNMTMDEQHCLKQSLAAFRKSAHAAASIQAVFRARSFCQRQLAKGSSDISETVHDLVADSMNKVQKMGHFEDYLHFAALRIQKRYRGWKGRKDFLKIRNRIVKIQAHFRGHRVRKQYKKVVWSVSVVEKAILRWRRKGAGLRGFRVGQPVGIVAKDAEKSDEYDFLSIGRRQKSDDVKKALDRVKSMVRNPEARDQYMRLIKKYQNFKIDDGRSSQLQHVD. 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00488 874 FunFam Calmodulin-binding transcription activator 2 726 774 - -
Seca11g00488 874 SMART ANK_2a 594 625 IPR002110 GO:0005515
Seca11g00488 874 SMART ANK_2a 555 584 IPR002110 GO:0005515
Seca11g00488 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 722 778 IPR027417 -
Seca11g00488 874 Gene3D - 725 774 - -
Seca11g00488 874 ProSiteProfiles IQ motif profile. 750 778 IPR000048 GO:0005515
Seca11g00488 874 ProSiteProfiles Ankyrin repeat profile. 555 587 IPR002110 GO:0005515
Seca11g00488 874 ProSiteProfiles Ankyrin repeat region circular profile. 555 580 - -
Seca11g00488 874 SMART iq_5 673 697 IPR000048 GO:0005515
Seca11g00488 874 SMART iq_5 726 748 IPR000048 GO:0005515
Seca11g00488 874 SMART iq_5 749 771 IPR000048 GO:0005515
Seca11g00488 874 MobiDBLite consensus disorder prediction 77 95 - -
Seca11g00488 874 SUPERFAMILY Ankyrin repeat 512 616 IPR036770 -
Seca11g00488 874 Gene3D Immunoglobulins 316 414 IPR013783 -
Seca11g00488 874 ProSiteProfiles IQ motif profile. 727 756 IPR000048 GO:0005515
Seca11g00488 874 Gene3D - 499 619 IPR036770 -
Seca11g00488 874 MobiDBLite consensus disorder prediction 59 95 - -
Seca11g00488 874 FunFam Calmodulin-binding transcription activator 2 316 413 - -
Seca11g00488 874 Pfam IQ calmodulin-binding motif 753 771 IPR000048 GO:0005515
Seca11g00488 874 Pfam IQ calmodulin-binding motif 730 747 IPR000048 GO:0005515
Seca11g00488 874 SUPERFAMILY E set domains 323 408 IPR014756 -
Seca11g00488 874 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 49 860 - -
Seca11g00488 874 Pfam IPT/TIG domain 323 408 IPR002909 -
Seca11g00488 874 CDD IPT 322 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00488 Seca-Chr11 4828538 4837254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00488 255 868 CAMTA Transcription Factor Family AT5G09410 42.631 1.18e-160 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00488 K21596 - gmx:100818336 1336.24