Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00471 ATGGTTGCAGAAGCGGAAATTATCTGTCAGCAGAGCATTCCCATGTTAGACGTGAAGTATCACCTTTGCGTGGCACAAGAACACAACGCCAAGGTTGAGGTTTCACCCACCTCACCTTCCCCTTCTGTCCAGATCTTTGGCCAAGCTGTGAGTTGCTCTGAGATCATTGGAGATTCCATTATGGAGATCCCTACAATGAAGTATATCCCAAATGTGCGTTCTGGTAGCTATGCTGAAATTGGACCACGGGGATCTATGGATGATGAACACATTAGGATAGATGATCTTGCTGGGCACCTTGGATTTGTGTTCAAGTACCCAATACCAAGTGCATTTTATGCAGTTTTTGATGGGCATGGAGGGCCTGATGCAGCTGCTTTTGTTAAGACGAATGCTATGAGATTATTTTTTGAAGATGCTAGCATGCTGCAATCATATGATACTGATGCATTTTTTCTGAAGAAGTTGGAGGATTCTCATCGGAGAGCATTTTTACGGGCAGATCTTGCCTTGGCTGATGAAGAAAGTGTTAGTAGTTCATGTGGGACTACAGCATTGACTGCCCTTGTACTTGGAAGCCATTTGCTCGTTGCTAATGCTGGTGACTGTCGAGCAGTTCTTTGCAGGAGAGGTGCAGCTGTTGAGATTTCTCAAGATCATAGGCCAAGTTCTTTACCAGAACGTAGGAGAGTGGAGGAGTTAGGTGGCTTCATTGATGATGGATATCTGAATGGTTATCTTTCTATAACCCGTGCCCTTGGGGATTGGGACTTAAAATTTCCACTTGGTGCTGCATCTCCTCTTATTGCTGAGCCTGATGTTCAACTGATTACATTGACAGAGGATGACGAGTTCTTGATCATTGGGTGTGATGGGATTTGGGATGTGATGTCTAGCCAATTTGCAGTTAGTCTTGTTCGCAGAGGATTAAGAAGGCATGATGACCCACAGCAATGTGCCAGAGAACTAGTCAAGGAAGCATTGCGGCTAAATACATCAGATAATGTCACTGTGATTGTTATATGTTTGTCCTCCATTGAAAGCATTGTTGAATCATGTCCGCCCCAAAGGCGAAGATTCAAAGCATGCAGTCTGTCTGAAGAGGCCCGAAATAGATTGAAGAGCTTGATAGAAGGAAATTGA 1143 0.4418 MVAEAEIICQQSIPMLDVKYHLCVAQEHNAKVEVSPTSPSPSVQIFGQAVSCSEIIGDSIMEIPTMKYIPNVRSGSYAEIGPRGSMDDEHIRIDDLAGHLGFVFKYPIPSAFYAVFDGHGGPDAAAFVKTNAMRLFFEDASMLQSYDTDAFFLKKLEDSHRRAFLRADLALADEESVSSSCGTTALTALVLGSHLLVANAGDCRAVLCRRGAAVEISQDHRPSSLPERRRVEELGGFIDDGYLNGYLSITRALGDWDLKFPLGAASPLIAEPDVQLITLTEDDEFLIIGCDGIWDVMSSQFAVSLVRRGLRRHDDPQQCARELVKEALRLNTSDNVTVIVICLSSIESIVESCPPQRRRFKACSLSEEARNRLKSLIEGN. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00471 380 PANTHER PROTEIN PHOSPHATASE 2C 58 341 IPR015655 GO:0004722|GO:0006470
Seca11g00471 380 ProSiteProfiles PPM-type phosphatase domain profile. 73 343 IPR001932 -
Seca11g00471 380 SMART PP2C_SIG_2 88 343 IPR001932 -
Seca11g00471 380 SMART PP2C_4 63 341 IPR001932 -
Seca11g00471 380 SUPERFAMILY PP2C-like 65 344 IPR036457 -
Seca11g00471 380 CDD PP2Cc 72 343 IPR001932 -
Seca11g00471 380 Gene3D - 65 348 IPR036457 -
Seca11g00471 380 FunFam Probable protein phosphatase 2C 22 58 346 - -
Seca11g00471 380 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169
Seca11g00471 380 Pfam Protein phosphatase 2C 83 336 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00471 Seca-Chr11 4620151 4622379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00471 1 379 PP2C-type Phosphatase Gene Family AT1G48040 55.838 1.10e-145 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00471 K14803 - gmx:100775577 673.7