Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00462 ATGGATGTAAAAGGAAGAAGAAGCAACACCACCTCCACCATCCTTCAGACTAGTAGTGATGAGGAGGAGATGGAGCTCCGAAGAGGCCCTTGGACCGTTGATGAGGACCTCACCCTCATCAATTACATTGCCACCCATGGCGAAGGTCGCTGGAATACCCTTGCCCTCTCTGCCGGCCTCAAACGCACAGGAAAGAGTTGCAGATTGAGGTGGCTCAACTATCTCCGTCCTGATGTTCGACGTGGAAACATCACACTCCAAGAACAACTTCTCATTCTCGAGCTCCATACTCGCTGGGGAAACCGATGGTCGAAAATTGCCCAGTATTTACCGGGAAGAACTGACAATGAGATAAAGAACTATTGGAGAACGCGTGTGCAAAAGCTTGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGTTACCTTTGGATGCCAAGGCTAGTAGAGCGCATTCAAGCAGCCAACACCAACACCTCCACTTCTCCAACTTCCATAACCGTTTCCGCGAATCACGCATCCATCTATAACGGAAAAATGGAGTTAACTCCGGCAGTTATAAACGGTGATTTTGCGGTTACGCAAAGTTATACCCCAGAGAACAGCAGCACAGGCGCCGCATCATCATCAGATTCGTTTGGGACTCAACTCTCAGATTTAACTGATTATTACAGCGTCCCCGTTAATAGTAACGGTAACCCTAACAATAATGCTGCTGCTGCAGAACATAATTGTTATTATCAACCTTCTCAACTTAGCTACTCCGATTGCATCACTCAGGGAATGGAATATTTCCAAGGCGTGGAGCCAAACACGCCGTGGATGCAAAGTGGAGACTCCTCCGATAATTTTTGGAACGTTGAAAATATGTTGTTTTTACAGCAGCAACTCATGAATGATAATTAA 924 0.4632 MDVKGRRSNTTSTILQTSSDEEEMELRRGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLQEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKLAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAANTNTSTSPTSITVSANHASIYNGKMELTPAVINGDFAVTQSYTPENSSTGAASSSDSFGTQLSDLTDYYSVPVNSNGNPNNNAAAAEHNCYYQPSQLSYSDCITQGMEYFQGVEPNTPWMQSGDSSDNFWNVENMLFLQQQLMNDN. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00462 307 CDD SANT 101 124 IPR001005 -
Seca11g00462 307 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 22 214 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca11g00462 307 MobiDBLite consensus disorder prediction 1 20 - -
Seca11g00462 307 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Seca11g00462 307 FunFam Myb transcription factor 28 80 - -
Seca11g00462 307 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Seca11g00462 307 SMART sant 80 128 IPR001005 -
Seca11g00462 307 SMART sant 27 77 IPR001005 -
Seca11g00462 307 FunFam MYB transcription factor 85 148 - -
Seca11g00462 307 Gene3D - 84 148 - -
Seca11g00462 307 MobiDBLite consensus disorder prediction 1 19 - -
Seca11g00462 307 SUPERFAMILY Homeodomain-like 25 122 IPR009057 -
Seca11g00462 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 75 IPR017930 -
Seca11g00462 307 CDD SANT 30 75 IPR001005 -
Seca11g00462 307 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Seca11g00462 307 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Seca11g00462 307 Gene3D - 25 81 - -
Seca11g00462 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00462 Seca-Chr11 4525712 4527561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00462 1 293 MYB Transcription Factor Family AT3G06490 50.774 6.08e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g00462 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00462 K09422 - gmx:100791349 414.461