Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00445 ATGTCTAAGGTGTTTCAATTTCGATCAAAGATCAACCCATCTCAGGCATTGATAATGATTGAACCTACTTTATGGGAGAAAGTAAAAGGAGATATACCTCAGAATTGTGTGCTTATAGATCCTGCTGAGAATACGTTTCCTGTTTTGGTAGTAGATAACGGTGATAGTGTTGCGTTTGTTAAGGGCGTTGATGAAATTTGTAGATTCTATAGGCTAGAAGAAACTCATAACGTCGTGTGTACTTACTTTGGGGATGATGAGTTCGAAATACAAATATTGAATGGGGACAATAAGTTAGTAAAGTGTCCGGATATTATAAACAATGGTGTGCCTTTAGAGTTATTTGATACTGATTCTATTCAAGATCTTAGACCTTTCCTTTTGTGGAGGGTTAATCTGTCTAAGGCTGCTGCTTCGGGTAAAAATGTAATGCCTATACCTGCTAGGTTAGTGACAAGTCTTCTGGATGGAAACCAATCATATGTTGATATTAAAGATGAGGACTATAATTTCACATCCTGCAAATTGTTGAGACCTAAAAGGAGGAAAACTGAGCGGGCAAAATTGGCATCAGTGAAATTTTTTGGACAAAATGGCATTCCCACTTACCATCCGAGTGATATTGACAACCAAGGTCATGTAGATTCTGTTGATGATGGCAGTGATCCTGAGGACTTCCCTTTCTGGATTTTCACAATGACCAAGTCATCTGCTTCAGGGAAGAATGCTTTGCCTATTCCTGCATATTTTTTCAGAGAGGGGCTTCTGGAAAGTCAGCGAGAATTGACTTTAAGACTTGGCAACGGTGAACAGATTCTTTGCAAAATATCAAAAGGTTCTAAAAGGAAGGATGAACGATATCTCTGTAGTGGTTGGTACAAGTTTTGTCGCAACAACAACTTCAAAGAGGGAGATATGTTGTTGTTTTATTCAAAGGGTGATGCTTACAATCTAATAATGACTTCATTACACAGGGGAGAATCCTCCAAGAAAAGTCCCTTATTGAGGTGTTTTCAAGCAAAGTTGGATCCATCTCAGACAACTATGCTTATAGATAGGAGATTTCATGCCATTTGGGAAAATCATTTCAATGATCGTTATTTCAGCTTAAGAGATCCTGAGCAAAATATACATTATGTTGGCACTATTAAGAATAGAGATGGTGATTATGTTTTCTATGTTGGAGTTCAATACATCATAGAGTTTTATCATTTGGAAGGTATCCATACTGTCCACTTCACCTATGCTGGGGACAAGTTCTTTGACATTAAAATTCTTAATATACATGATAAGGAGATACATTATCCAAAAAATGGAGGTTGGGATAATTTTGTTCCCAGAGACTCTGACCATATTGAGTTACCAATTCCTGCTAAAATTGTCCGTGAAGTGCTTAAAGAGAACCAACGACTGGTGTACATCTTTGATAAGGATGAAAATGTCTTCATTGTCGATTTGAGGCGTGGAAGAAGAATAGGAGAATGCTACTTTGGAATGCAATGGTATCAATTTGTTAAAGACAAAAAGCTGAACGAGGGAGACACTGTGGAGTTTAAATTTATTGATAGTCACAGAAACATTTATGCAAAAATAATTAGGGGTTGA 1605 0.372 MSKVFQFRSKINPSQALIMIEPTLWEKVKGDIPQNCVLIDPAENTFPVLVVDNGDSVAFVKGVDEICRFYRLEETHNVVCTYFGDDEFEIQILNGDNKLVKCPDIINNGVPLELFDTDSIQDLRPFLLWRVNLSKAAASGKNVMPIPARLVTSLLDGNQSYVDIKDEDYNFTSCKLLRPKRRKTERAKLASVKFFGQNGIPTYHPSDIDNQGHVDSVDDGSDPEDFPFWIFTMTKSSASGKNALPIPAYFFREGLLESQRELTLRLGNGEQILCKISKGSKRKDERYLCSGWYKFCRNNNFKEGDMLLFYSKGDAYNLIMTSLHRGESSKKSPLLRCFQAKLDPSQTTMLIDRRFHAIWENHFNDRYFSLRDPEQNIHYVGTIKNRDGDYVFYVGVQYIIEFYHLEGIHTVHFTYAGDKFFDIKILNIHDKEIHYPKNGGWDNFVPRDSDHIELPIPAKIVREVLKENQRLVYIFDKDENVFIVDLRRGRRIGECYFGMQWYQFVKDKKLNEGDTVEFKFIDSHRNIYAKIIRG. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00445 534 Gene3D - 438 533 IPR015300 -
Seca11g00445 534 Gene3D - 4 96 IPR015300 -
Seca11g00445 534 PANTHER B3 DOMAIN-CONTAINING 232 521 - -
Seca11g00445 534 Pfam B3 DNA binding domain 232 314 IPR003340 GO:0003677
Seca11g00445 534 Pfam B3 DNA binding domain 451 533 IPR003340 GO:0003677
Seca11g00445 534 SMART B3_2 440 531 IPR003340 GO:0003677
Seca11g00445 534 SMART B3_2 230 327 IPR003340 GO:0003677
Seca11g00445 534 SUPERFAMILY DNA-binding pseudobarrel domain 452 524 IPR015300 -
Seca11g00445 534 ProSiteProfiles B3 DNA-binding domain profile. 229 327 IPR003340 GO:0003677
Seca11g00445 534 SUPERFAMILY DNA-binding pseudobarrel domain 224 316 IPR015300 -
Seca11g00445 534 Gene3D - 219 327 IPR015300 -
Seca11g00445 534 CDD B3_DNA 229 321 IPR003340 GO:0003677
Seca11g00445 534 SUPERFAMILY DNA-binding pseudobarrel domain 18 94 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00445 Seca-Chr11 4384284 4388564 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca11g00445 B3 1.8e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00445 - K09287 tcc:18611039 44.669